fix: fixed escaping of arguments to entrypoint of Docker image

Dockerfile

@@ -1,5 +1,5 @@
 # VERSION
-ARG VERSION=0.0.8
+ARG VERSION=0.0.9
 ARG SIMULATOR_VERSION="2021-10-05"
 
 # Base OS
@@ -57,6 +57,8 @@ ENV VERBOSE=0 \
 # - ugo+w permissions to `${OPENCORDIR}/python/bin` are needed because the OpenCOR Python pluging dynamically generates these files
 RUN mkdir ${HOMEDIR}/Biosimulators_OpenCOR \
     && chmod -R ugo+w ${OPENCORDIR}/python/bin
+ENV PATH=${OPENCORDIR}/python/bin:$PATH
 WORKDIR ${HOMEDIR}/Biosimulators_OpenCOR
-ENTRYPOINT ["pythonshell", "-m", "biosimulators_opencor"]
+COPY scripts/biosimulators-opencor ${OPENCORDIR}/python/bin
+ENTRYPOINT ["biosimulators-opencor"]
 CMD []

biosimulators_opencor/__main__.py

@@ -11,7 +11,7 @@
 from .core import exec_sedml_docs_in_combine_archive
 from biosimulators_utils.simulator.cli import build_cli
 
-App = build_cli('opencor', __version__,
+App = build_cli('biosimulators-opencor', __version__,
                 'OpenCOR', get_simulator_version(), 'https://opencor.ws',
                 exec_sedml_docs_in_combine_archive)
 

biosimulators_opencor/_version.py

@@ -1 +1 @@
-__version__ = '0.0.8'
+__version__ = '0.0.9'

scripts/biosimulators-opencor

@@ -0,0 +1,4 @@
+#!/bin/sh
+
+opencor_path=$(which OpenCOR)
+"$(cd "$(dirname "$opencor_path")"; pwd)/bin/OpenCOR" -c PythonShell -m biosimulators_opencor "$@"

setup.py

@@ -56,7 +56,7 @@
     ],
     entry_points={
         'console_scripts': [
-            'biosimulators-opencor = biosimulators_opencor.__main__:main',
+            # 'biosimulators-opencor = biosimulators_opencor.__main__:main',
         ],
     },
 )