feat(nifti): Add nifti volume loader to cornerstone 3D repo (#696)

* initial commit for nifti reading

* remaining files

* nifti with tools

* apply review comments

* update api

* update api

* update api

* fix ci

* fix version

* apply review comments

* update api extractor

* api-check

.circleci/config.yml

@@ -48,6 +48,7 @@ jobs:
             - packages/streaming-image-volume-loader/dist
             - packages/adapters/dist
             - packages/dicomImageLoader/dist
+            - packages/nifti-volume-loader/dist
             - version.txt
             - commit.txt
             - version.json

common/reviews/api/core.api.md

@@ -47,6 +47,34 @@ function addProvider(provider: (type: string, query: any) => any, priority?: num
 // @public (undocumented)
 export function addVolumesToViewports(renderingEngine: IRenderingEngine, volumeInputs: Array<IVolumeInput>, viewportIds: Array<string>, immediateRender?: boolean, suppressEvents?: boolean): Promise<void>;
 
+// @public (undocumented)
+type AffineMatrix = [
+[
+number,
+number,
+number,
+number
+],
+[
+number,
+number,
+number,
+number
+],
+[
+number,
+number,
+number,
+number
+],
+[
+number,
+number,
+number,
+number
+]
+];
+
 // @public (undocumented)
 function applyPreset(actor: VolumeActor, preset: ViewportPreset): void;
 
@@ -491,7 +519,7 @@ function createAndCacheDerivedVolume(referencedVolumeId: string, options: Derive
 function createAndCacheGeometry(geometryId: string, options: GeometryOptions): Promise<IGeometry>;
 
 // @public (undocumented)
-function createAndCacheVolume(volumeId: string, options: VolumeLoaderOptions): Promise<Record<string, any>>;
+function createAndCacheVolume(volumeId: string, options?: VolumeLoaderOptions): Promise<Record<string, any>>;
 
 // @public (undocumented)
 function createFloat32SharedArray(length: number): Float32Array;
@@ -1934,17 +1962,7 @@ function loadImageToCanvas(options: LoadImageOptions): Promise<string>;
 function loadVolume(volumeId: string, options?: VolumeLoaderOptions): Promise<Types.IImageVolume>;
 
 // @public (undocumented)
-type Mat3 = [
-number,
-number,
-number,
-number,
-number,
-number,
-number,
-number,
-number
-];
+type Mat3 = [number, number, number, number, number, number, number, number, number] | Float32Array;
 
 // @public (undocumented)
 type Metadata = {
@@ -2487,7 +2505,8 @@ declare namespace Types {
         ColormapRegistration,
         PixelDataTypedArray,
         ImagePixelModule,
-        ImagePlaneModule
+        ImagePlaneModule,
+        AffineMatrix
     }
 }
 export { Types }