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  1. SComatic SComatic Public

    A tool for detecting somatic variants in single cell data

    Python 154 24

  2. savana savana Public

    Somatic structural variant caller for long-read data

    Python 43 2

  3. ReConPlot ReConPlot Public

    HTML 21 2

  4. telomere_fusions telomere_fusions Public

    Code to call telomere fusions using DNA sequencing data

    R 4

  5. ClonalSim ClonalSim Public

    Python 1

  6. DeMethify DeMethify Public

    DeMethify is a partial-reference based methylation deconvolution algorithm that uses a weighted constrained version of an iteratively optimized negative matrix factorization algorithm.

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Showing 10 of 13 repositories
  • SComatic Public

    A tool for detecting somatic variants in single cell data

    cortes-ciriano-lab/SComatic’s past year of commit activity
    Python 154 24 17 4 Updated Sep 15, 2024
  • savana Public

    Somatic structural variant caller for long-read data

    cortes-ciriano-lab/savana’s past year of commit activity
    Python 43 Apache-2.0 2 4 1 Updated Aug 23, 2024
  • cortes-ciriano-lab/lta-analysis’s past year of commit activity
    R 0 0 0 0 Updated Jul 28, 2024
  • cortes-ciriano-lab/ReConPlot’s past year of commit activity
    HTML 21 GPL-3.0 2 1 0 Updated Jun 17, 2024
  • ont_fb-inv_artefacts Public

    Method to estimate the rate of fold-back inversion artefacts in ONT sequencing data

    cortes-ciriano-lab/ont_fb-inv_artefacts’s past year of commit activity
    Python 0 0 0 0 Updated Jun 17, 2024
  • osteosarcoma_evolution Public

    Code for the analysis of the mechanisms underpinning osteosarcoma genome complexity and evolution

    cortes-ciriano-lab/osteosarcoma_evolution’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 13, 2023
  • cortes-ciriano-lab/ClonalSim’s past year of commit activity
    Python 1 0 0 0 Updated Nov 16, 2023
  • cortes-ciriano-lab/TelFusDetector’s past year of commit activity
    Python 1 1 0 0 Updated Sep 27, 2023
  • telomere_fusions Public

    Code to call telomere fusions using DNA sequencing data

    cortes-ciriano-lab/telomere_fusions’s past year of commit activity
    R 4 0 0 0 Updated Aug 11, 2023
  • cortes-ciriano-lab/MMRd_immunogenicity’s past year of commit activity
    Shell 1 0 0 0 Updated Aug 3, 2023

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