Graphium 3.0 #2213
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| name: test | |
| on: | |
| push: | |
| branches: ["main"] | |
| tags: ["*"] | |
| pull_request: | |
| branches: | |
| - "*" | |
| - "!gh-pages" | |
| schedule: | |
| - cron: "0 4 * * *" | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.09", "3.10", "3.11"] | |
| pytorch-version: ["2.0"] | |
| runs-on: "ubuntu-latest" | |
| timeout-minutes: 30 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: | | |
| regular_env - | |
| python=${{ matrix.python-version }} - | |
| pytorch=${{ matrix.pytorch-version }} | |
| steps: | |
| - name: Checkout the code | |
| uses: actions/checkout@v3 | |
| - name: Setup mamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: env.yml | |
| environment-name: graphium | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| pytorch=${{ matrix.pytorch-version }} | |
| - name: Install library | |
| run: python -m pip install --no-deps -e . # `-e` required for correct `coverage` run. | |
| - name: Install test dependencies | |
| run: micromamba install -c conda-forge pytdc # Required to run the `test_finetuning.py` | |
| - name: Install C++ library | |
| run: cd graphium/graphium_cpp && git clone https://github.com/pybind/pybind11.git && export PYTHONPATH=$PYTHONPATH:./pybind11 && python -m pip install . && cd ../.. | |
| - name: Run tests | |
| run: pytest -m 'not ipu' | |
| - name: Test CLI | |
| run: graphium --help | |
| - name: Test building the doc | |
| run: mkdocs build | |
| - name: Codecov Upload | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| verbose: false | |
| env_vars: ${{ matrix.python-version }},${{ matrix.pytorch-version }} |