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fix: fix DPH5Path.glob for new keys #4152

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merged 1 commit into from
Sep 21, 2024

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@njzjz njzjz commented Sep 20, 2024

Fix #4151.

Summary by CodeRabbit

  • New Features

    • Enhanced path filtering logic to include a broader range of keys when generating subpaths.
  • Bug Fixes

    • Improved the accuracy of path results returned by the glob method.

Fix deepmodeling#4151.

Signed-off-by: Jinzhe Zeng <jinzhe.zeng@rutgers.edu>
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coderabbitai bot commented Sep 20, 2024

Walkthrough

Walkthrough

The changes involve the addition of the itertools module import and an update to the glob method in the DPPath class located in deepmd/utils/path.py. The modification enhances the logic for generating the subpaths list by utilizing itertools.chain to combine two sets of keys, allowing for a broader range of paths to be filtered based on a specified name.

Changes

Files Change Summary
deepmd/utils/path.py Added import for itertools and modified the glob method in DPPath to enhance path filtering by using itertools.chain to combine self._keys and self._new_keys.

Assessment against linked issues

Objective Addressed Explanation
Ensure computed stats are flushed to the file to prevent loading errors (#[4151]) The changes do not address the flushing of computed stats to the file.

Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between c084b20 and 8dd3b4c.

Files selected for processing (1)
  • deepmd/utils/path.py (2 hunks)
Additional comments not posted (1)
deepmd/utils/path.py (1)

377-381: Excellent improvement to the glob method!

The updated list comprehension, which uses itertools.chain to combine self._keys and self._new_keys, ensures that the glob method considers both existing and newly added keys when searching for paths. This fix addresses a potential issue where recently added paths might have been overlooked, leading to incomplete search results.

The use of itertools.chain is an efficient approach to combine the two lists without creating a new list, improving performance.


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@njzjz njzjz linked an issue Sep 20, 2024 that may be closed by this pull request
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codecov bot commented Sep 20, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 83.37%. Comparing base (c084b20) to head (8dd3b4c).
Report is 2 commits behind head on devel.

Additional details and impacted files
@@            Coverage Diff             @@
##            devel    #4152      +/-   ##
==========================================
- Coverage   83.37%   83.37%   -0.01%     
==========================================
  Files         532      532              
  Lines       52166    52167       +1     
  Branches     3046     3046              
==========================================
- Hits        43493    43492       -1     
  Misses       7726     7726              
- Partials      947      949       +2     

☔ View full report in Codecov by Sentry.
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@wanghan-iapcm wanghan-iapcm added this pull request to the merge queue Sep 21, 2024
Merged via the queue into deepmodeling:devel with commit d224fdd Sep 21, 2024
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[BUG] EnvMatStat fails when two descriptors have the same hash
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