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update Dockerfile
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seabbs committed May 8, 2023
1 parent 3e060d9 commit ad7574d
Showing 1 changed file with 11 additions and 5 deletions.
16 changes: 11 additions & 5 deletions .devcontainer/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,7 @@ RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
libssl-dev \
libxml2-dev \
libxt-dev \
libmagick++-6.q16-8 \
pandoc \
&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* /tmp/library-scripts \
&& python3 -m pip --no-cache-dir install radian pre-commit \
Expand All @@ -46,12 +47,17 @@ RUN apt-get update \
RUN Rscript -e 'devtools::install_github("mdlincoln/docthis")'
RUN Rscript -e 'devtools::install_github("lorenzwalthert/precommit")'
RUN Rscript -e 'devtools::install_github("milesmcbain/fnmate")'
RUN Rscript -e 'devtools::install_github("milesmcbain/datapasta")'

# install cmdstanr
RUN Rscript -e 'devtools::install_github("stan-dev/cmdstanr")'
# install cmdstan
RUN Rscript -e "cmdstanr::install_cmdstan()"
# add dependencies for logo making
RUN install2.r --error --skipinstalled --repos ${CRAN} --ncpus -1 \
hexSticker \
sysfonts \
&& rm -rf /tmp/downloaded_packages

# install dependencies
COPY DESCRIPTION /tmp/package/DESCRIPTION
RUN Rscript -e "devtools::install_deps('/tmp/package', dependencies = TRUE)"
RUN Rscript -e "devtools::install_deps('/tmp/package', dependencies = c( 'Depends', 'Imports', 'LinkingTo', 'Suggests'))"

# install cmdstan
RUN Rscript -e "cmdstanr::install_cmdstan(quiet = TRUE)"

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