Add ITAG data type.

fcyu · Mar 9, 2018 · 36a1cf1 · 36a1cf1
1 parent e3fecc5
commit 36a1cf1
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/main/java/proteomics/TheoSeq/DbTool.java b/src/main/java/proteomics/TheoSeq/DbTool.java
@@ -26,7 +26,7 @@ public DbTool(String db_name, String databaseType) throws IOException {
             header_pattern = Pattern.compile("^>([^\\s]+)[\\s|]+(.+)$");
         } else if (databaseType.contentEquals("UniProt") || databaseType.contentEquals("SwissProt")) {
             header_pattern = Pattern.compile("^>[^|]+\\|(.+)\\|(.+)$");
-        } else if (databaseType.contentEquals("contaminants")) {
+        } else if (databaseType.contentEquals("contaminants") || databaseType.contentEquals("ITAG")) {
             header_pattern = Pattern.compile("^>([^ ]+) (.+)$");
         } else if (databaseType.contentEquals("Others")) {
             header_pattern = Pattern.compile("^>(.+)$");

diff --git a/src/main/resources/parameter.def b/src/main/resources/parameter.def
@@ -6,7 +6,7 @@ dev = 0 # Output development information.
 
 # Database
 db = small+random50.fasta # The protein database.
-database_type = UniProt # Different types have different fasta header patterns. Available values: UniProt, SwissProt, TAIR, Others
+database_type = UniProt # Different types have different fasta header patterns. Available values: UniProt, SwissProt, TAIR, ITAG, Others
 missed_cleavage = 2 # Maximum number of allowed missed cleavage.
 min_chain_length = 5 # Minimum length of a peptide chain.
 max_chain_length = 50