Use my custom jmzReader to avoid muting the System.out.

fcyu · Dec 23, 2017 · 4769cb3 · 4769cb3
1 parent ddd2c87
commit 4769cb3
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Showing 2 changed files with 1 addition and 10 deletions.
diff --git a/pom.xml b/pom.xml
@@ -37,7 +37,7 @@
         <dependency>
             <groupId>uk.ac.ebi.pride.tools</groupId>
             <artifactId>jmzreader</artifactId>
-            <version>2.0.2</version>
+            <version>2.0.3-SNAPSHOT</version>
             <type>jar</type>
         </dependency>
         <dependency>

diff --git a/src/main/java/proteomics/Spectrum/PreSpectra.java b/src/main/java/proteomics/Spectrum/PreSpectra.java
@@ -43,13 +43,6 @@ public PreSpectra(JMzReader spectra_parser, BuildIndex build_index_obj, Map<Stri
             }
         }
 
-        PrintStream original_stream = System.out;
-        PrintStream null_stream = new PrintStream(new OutputStream() {
-            @Override
-            public void write(int b) throws IOException {}
-        });
-        System.setOut(null_stream);
-
         Iterator<Spectrum> spectrumIterator = spectra_parser.getSpectrumIterator();
         try {
             while (spectrumIterator.hasNext()) {
@@ -145,8 +138,6 @@ public void write(int b) throws IOException {}
             ex.printStackTrace();
             System.exit(1);
         }
-
-        System.setOut(original_stream);
     }
 
     public Map<Integer, SpectrumEntry> getNumSpectrumMap() {