Change "ECL 2.0" to "ECL2".

pom.xml

@@ -3,11 +3,11 @@
     <modelVersion>4.0.0</modelVersion>
 
     <groupId>hk.ust.bioinformatics</groupId>
-    <artifactId>ECL2.0</artifactId>
+    <artifactId>ECL2</artifactId>
     <version>2.1.3</version>
     <packaging>jar</packaging>
 
-    <name>ECL2.0</name>
+    <name>ECL2</name>
     <licenses>
         <license>
             <name>Apache 2</name>

src/main/java/proteomics/ECL2.java

@@ -82,7 +82,7 @@ public static void main(String[] args) {
             if (ext.contentEquals("mzXML")) {
                 spectra_parser = new MzXMLFile(spectra_file);
             } else {
-                logger.error("Unsupported data format {}. ECL 2.0 only support mzXML.", ext);
+                logger.error("Unsupported data format {}. ECL2 only support mzXML.", ext);
                 System.exit(1);
             }
         } catch (FileNotFoundException | MzXMLParsingException | NullPointerException ex) {
@@ -315,12 +315,12 @@ private static boolean hasUnfinishedFuture(List<Future<FinalResultEntry>> future
     }
 
     private static void help() {
-        String help_str = "ECL 2.0 version " + version + "\r\n"
+        String help_str = "ECL2 version " + version + "\r\n"
                 + "A cross-linked peptides identification tool with exhaustive searching and linear computational complexity\r\n"
                 + "Author: Fengchao Yu\r\n"
                 + "Email: fyuab@connect.ust.hk\r\n"
                 + "ECL2 usage: java -Xmx25g -jar /path/to/ECL2.jar <parameter_file> <data_file>\r\n"
-                + "\t<parameter_file>: parameter file. Can be download along with ECL 2.0.\r\n"
+                + "\t<parameter_file>: parameter file. Can be download along with ECL2.\r\n"
                 + "\t<data_file>: spectra data file (mzXML)\r\n"
                 + "\texample: java -Xmx32g -jar ECL2.jar parameter.def data.mzxml\r\n";
         System.out.print(help_str);

src/main/resources/parameter.def

@@ -68,4 +68,4 @@ n = 0
 c = 0
 
 # for debug
-# put your cared scan number below. One number each line
+# put interested scan numbers below. One number each line