Delete a debug output.

fcyu · Jan 30, 2018 · 82cd63f · 82cd63f
1 parent 5d2f63a
commit 82cd63f
Showing 1 changed file with 0 additions and 14 deletions.
diff --git a/src/main/java/proteomics/Search/SearchWrap.java b/src/main/java/proteomics/Search/SearchWrap.java
@@ -52,20 +52,6 @@ public FinalResultEntry call() throws IOException {
         }
         ResultEntry resultEntry =  search_obj.doSearch(spectrumEntry, xcorrPL);
         if (resultEntry != null) {
-            if (ECL2.debug) {
-                SparseBooleanVector chainVector1 = mass_tool_obj.buildTheoVector(resultEntry.getChain1(), (short) resultEntry.getLinkSite1(), spectrumEntry.precursor_mass - (float) (mass_tool_obj.calResidueMass(resultEntry.getChain1()) + MassTool.H2O), spectrumEntry.precursor_charge);
-                SparseBooleanVector chainVector2 = mass_tool_obj.buildTheoVector(resultEntry.getChain2(), (short) resultEntry.getLinkSite2(), spectrumEntry.precursor_mass - (float) (mass_tool_obj.calResidueMass(resultEntry.getChain2()) + MassTool.H2O), spectrumEntry.precursor_charge);
-                BufferedWriter writer = new BufferedWriter(new FileWriter(spectrumEntry.scan_num + ".chain.spectrum.csv"));
-                writer.write(resultEntry.getChain1() + " bin idx\n");
-                for (int idx : chainVector1.getIdxSet()) {
-                    writer.write(idx + "\n");
-                }
-                writer.write(resultEntry.getChain2() + " bin idx\n");
-                for (int idx : chainVector2.getIdxSet()) {
-                    writer.write(idx + "\n");
-                }
-                writer.close();
-            }
             if (1 - (resultEntry.getSecondScore() / resultEntry.getScore()) > delta_c_t) {
                 if (cal_evalue) {
                     float originalTolerance;