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@fish-quant

FISH-quant

Analysis of smFISH images.

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  1. big-fish big-fish Public

    Toolbox for the analysis of smFISH images.

    Python 55 18

  2. big-fish-examples big-fish-examples Public

    Notebooks to illustrate how BigFISH is working.

    Jupyter Notebook 13 8

  3. fq-imjoy fq-imjoy Public

    ImJoy plugins to run different smFISH analysis in a user-friendly setting.

    HTML 2 1

  4. fq-segmentation fq-segmentation Public

    Wrapper code for segmentation of cells and nuclei with Cellpose.

    Python 2 2

  5. autofish autofish Public

    Python code to control automated iterative FISH system

    Python 2

  6. sim-fish sim-fish Public

    Toolbox to simulate smFISH images.

    Python 7 1

Repositories

Showing 10 of 10 repositories
  • autofish Public

    Python code to control automated iterative FISH system

    fish-quant/autofish’s past year of commit activity
    Python 2 MIT 0 6 1 Updated Jul 2, 2024
  • ComSeg Public

    comseg

    fish-quant/ComSeg’s past year of commit activity
    Python 13 MIT 2 0 0 Updated Jun 11, 2024
  • tutorial_gene_selection Public
    fish-quant/tutorial_gene_selection’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 28, 2024
  • big-fish Public

    Toolbox for the analysis of smFISH images.

    fish-quant/big-fish’s past year of commit activity
    Python 55 BSD-3-Clause 18 13 2 Updated Oct 31, 2023
  • fq-segmentation Public

    Wrapper code for segmentation of cells and nuclei with Cellpose.

    fish-quant/fq-segmentation’s past year of commit activity
    Python 2 BSD-3-Clause 2 2 1 Updated Jul 19, 2023
  • fq-imjoy Public

    ImJoy plugins to run different smFISH analysis in a user-friendly setting.

    fish-quant/fq-imjoy’s past year of commit activity
    HTML 2 MIT 1 15 0 Updated Mar 8, 2023
  • sim-fish Public

    Toolbox to simulate smFISH images.

    fish-quant/sim-fish’s past year of commit activity
    Python 7 BSD-3-Clause 1 1 0 Updated Sep 5, 2022
  • big-fish-examples Public

    Notebooks to illustrate how BigFISH is working.

    fish-quant/big-fish-examples’s past year of commit activity
    Jupyter Notebook 13 BSD-3-Clause 8 3 0 Updated Sep 5, 2022
  • fish-quant.github.io Public

    Landing page for fish-quant organization.

    fish-quant/fish-quant.github.io’s past year of commit activity
    JavaScript 1 MIT 1 1 0 Updated Feb 21, 2022
  • fq-interactive-docs Public

    Interactive ImJoy docs

    fish-quant/fq-interactive-docs’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 11, 2021

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