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  1. splicing splicing Public

    Snakemake pipeline for running MAJIQ

    R 15 6

  2. rna_seq_snakemake rna_seq_snakemake Public

    Snakemake Pipeline For RNA-Seq in UCL Cluster

    Python 10 4

  3. unc13a_cryptic_splicing unc13a_cryptic_splicing Public

    Figures for UNC13A paper

    R 4 1

  4. helpful_scripts helpful_scripts Public

    Helpful scripts for performing routine analyses

    R 3

  5. pipeline_iclip pipeline_iclip Public

    Shell 3 1

  6. paqr_annotations paqr_annotations Public

    Snakemake workflow to generate annotation files for PAQR

    Python 2

Repositories

Showing 10 of 21 repositories
  • tdp43-apa Public

    Code for TDP-43 APA manuscript

    frattalab/tdp43-apa’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 13, 2024
  • SpliceNouveau Public
    frattalab/SpliceNouveau’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 13, 2024
  • QAPA_snakemake Public

    Snakemake pipeline to run QAPA and perform differential polyA site usage analysis

    frattalab/QAPA_snakemake’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Jul 31, 2024
  • rna_seq_snakemake Public

    Snakemake Pipeline For RNA-Seq in UCL Cluster

    frattalab/rna_seq_snakemake’s past year of commit activity
    Python 10 4 9 1 Updated May 24, 2024
  • rna_seq_single_steps Public

    Snakemake pipelines for common bioinformatics tasks

    frattalab/rna_seq_single_steps’s past year of commit activity
    Python 0 1 1 0 Updated May 13, 2024
  • PAPA Public

    PAPA (Pipeline-Alternative Polyadenylation) - Snakemake pipeline for analysis of APA from short-read RNA-seq data

    frattalab/PAPA’s past year of commit activity
    Python 1 GPL-3.0 0 13 0 Updated Jan 19, 2024
  • splicing Public

    Snakemake pipeline for running MAJIQ

    frattalab/splicing’s past year of commit activity
    R 15 6 2 (1 issue needs help) 0 Updated Dec 20, 2023
  • bedops_parse_star_junctions Public

    Pipeline for taking STAR's SJ.out files and parsing the counts for a given bed of named spliced junctions

    frattalab/bedops_parse_star_junctions’s past year of commit activity
    Python 1 2 0 0 Updated Sep 19, 2023
  • hisat3_snakemake Public

    quick snakemake pipeline for running hisat3n

    frattalab/hisat3_snakemake’s past year of commit activity
    Python 1 0 0 0 Updated Feb 21, 2023
  • helpful_scripts Public

    Helpful scripts for performing routine analyses

    frattalab/helpful_scripts’s past year of commit activity
    R 3 0 0 0 Updated Mar 18, 2022
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