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@ftdc-picsl

Penn FTDC-PICSL group

Collaborative projects from the FTD Center and PICSL lab http://ftd.med.upenn.edu/our-center

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  1. antsct-aging antsct-aging Public

    ANTs cortical thickness pipeline container, contains a template for older individuals

    Perl 1 2

  2. pmacsPreps pmacsPreps Public

    *prep wrapper scripts for the PMACS cluster

    Shell 1

  3. QuANTs QuANTs Public

    Quality control, quantifying regional values, and querying of ANTs output

    R

  4. SynthSeg SynthSeg Public

    Containerized implementation of SynthSeg with additional preprocessing options

    Python 2

  5. antsnetct antsnetct Public

    Cortical thickness with ANTsPyNet

    Python

  6. T1wPreprocessing T1wPreprocessing Public

    Container for pre-processing T1w data before running structural analyses

    Python

Repositories

Showing 10 of 31 repositories
  • antsnetct Public

    Cortical thickness with ANTsPyNet

    ftdc-picsl/antsnetct’s past year of commit activity
    Python 0 Apache-2.0 0 3 0 Updated Sep 9, 2024
  • LongitudinalThickness Public

    Development of longitudinal cortical thickness pipelines

    ftdc-picsl/LongitudinalThickness’s past year of commit activity
    0 0 0 0 Updated Sep 9, 2024
  • pmacsSynthSeg Public

    Wrapper to run synthseg on the PMACS LPC

    ftdc-picsl/pmacsSynthSeg’s past year of commit activity
    Python 1 0 0 0 Updated Sep 9, 2024
  • pmacsT1wPreprocessing Public

    Wrapper to run T1wPreprocessing container on the LPC

    ftdc-picsl/pmacsT1wPreprocessing’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 6, 2024
  • T1wPreprocessing Public

    Container for pre-processing T1w data before running structural analyses

    ftdc-picsl/T1wPreprocessing’s past year of commit activity
    Python 0 0 0 0 Updated Sep 6, 2024
  • pmacsAntsnetct Public

    Wrapper for submitting antsnetct jobs on the PMACS cluster

    ftdc-picsl/pmacsAntsnetct’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 4, 2024
  • rmsTheEchos Public

    creates an rms image from echos of a t1

    ftdc-picsl/rmsTheEchos’s past year of commit activity
    Python 0 0 0 0 Updated Sep 4, 2024
  • pmacsANTsPyNet Public

    Framework for running ANTsPyNet tools on the PMACS LPC

    ftdc-picsl/pmacsANTsPyNet’s past year of commit activity
    Python 0 0 0 0 Updated Aug 27, 2024
  • SynthSeg Public

    Containerized implementation of SynthSeg with additional preprocessing options

    ftdc-picsl/SynthSeg’s past year of commit activity
    Python 2 0 0 0 Updated Aug 16, 2024
  • hcpASLregInTauTDP Public

    CBF image to T1w image automated registration code, created for likely sporadic tau and tdp manuscript

    ftdc-picsl/hcpASLregInTauTDP’s past year of commit activity
    Shell 0 0 0 0 Updated Aug 2, 2024
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