Skip to content

Latest commit

 

History

History
16 lines (10 loc) · 808 Bytes

README.md

File metadata and controls

16 lines (10 loc) · 808 Bytes
Raw

LongitudinalThickness

Development of longitudinal cortical thickness pipelines.

FTDC-PICSL tools for longitudinal thickness

  • T1wPreprocessing conforms data orientation, does GPU-accelerated brain extraction using HD-BET, and outputs a QC image. Optionally, it will also perform neck trimming.

  • antsnetct performs neck trimming, brain extraction, segmentation, cortical thickness estimation, and normalization to a template. Both cross-sectional and longitudinal pipelines are supported.

  • SynthSeg runs synthseg on the GPU and can generate priors for antsnetct.

All of these have wrapper scripts for PMACS users under

/project/ftdc_pipeline/ftdc-picsl