Release version 3.1.2 #412
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow triggered when we have a new release candidate | |
| # This action is adapted from https://github.com/t4d-gmbh/stubbed_versioning | |
| name: Runs on non-release pull requests | |
| on: | |
| pull_request: | |
| branches: | |
| - "*" # run for any pull request (see 1st job if condition for head name selection) | |
| jobs: | |
| should-run: | |
| if: ${{ (github.ref != 'refs/heads/main') && (!startsWith(github.head_ref, 'release-')) && (!startsWith(github.event.head_commit.message, 'noT')) }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Info | |
| run: | | |
| echo "Running development tests for branch ${{ github.head_ref }}" | |
| get-target-container: | |
| needs: should-run | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| CONTAINER: ${{ steps.container.outputs.container }} | |
| steps: | |
| - name: Get container | |
| id: container | |
| env: | |
| BRANCH: ${{ github.ref_name }} | |
| run: | | |
| if [[ $BRANCH == *"__"* ]]; then | |
| echo "container=${BRANCH##*__}" >> $GITHUB_OUTPUT | |
| else | |
| echo "container=debian/clang/devel" >> $GITHUB_OUTPUT | |
| fi | |
| get_changes: | |
| needs: should-run | |
| runs-on: ubuntu-latest | |
| outputs: | |
| run_all: ${{ steps.changed_files.outputs.changed_src }} | |
| run_specific: ${{ steps.changed_files.outputs.changed_r }} | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| OWNER: ${{ github.repository_owner }} | |
| REPO: ${{ github.event.repository.name }} | |
| EVENT: ${{ github.event.number }} # This is either the issue or pr | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Find changed files | |
| id: changed_files | |
| run: | | |
| echo "CHANGED_SRC=$(gh pr view ${{ env.EVENT }} --json 'files' --jq '.[].[] | select(.path | startswith("src/")) | .path' | xargs | sed -e 's/ /,/g')" >> $GITHUB_OUTPUT | |
| echo "CHANGED_R=$(gh pr view ${{ env.EVENT }} --json 'files' --jq '.[].[] | select(.path | startswith("R/")) | .path' | xargs | sed -e 's/ /,/g')" >> $GITHUB_OUTPUT | |
| cat $GITHUB_OUTPUT | |
| gather-tests: | |
| needs: | |
| - get_changes | |
| runs-on: ubuntu-latest | |
| outputs: | |
| testfiles: ${{ steps.get_testfiles.outputs.testfiles }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Identify tests to run | |
| id: get_testfiles | |
| run: | | |
| if [[ -z "${{ needs.get_changes.outputs.run_all }}" ]]; then | |
| if [[ -n "${{ needs.get_changes.outputs.run_specific }}" ]]; then | |
| echo "TESTFILES=$(echo ${{ needs.get_changes.outputs.run_specific }} | sed -e 's/^R\//\"tests\/testthat\/test-/g' -e 's/,R\//,\"tests\/testthat\/test-/g' | sed -e 's/.R/.R\"/g' | sed 's/.*/[\0]/')" >> $GITHUB_OUTPUT | |
| else | |
| echo "TESTFILES=[]" >> $GITHUB_OUTPUT | |
| fi | |
| else | |
| echo "TESTFILES=$(ls tests/testthat/test-*.R | jq -R -s -c 'split("\n")[:-1]')" >> $GITHUB_OUTPUT | |
| fi | |
| cat $GITHUB_OUTPUT | |
| build-install-test: | |
| if: ${{ ( needs.gather-tests.outputs.testfiles != '[]' ) }} | |
| needs: | |
| - gather-tests | |
| - get-target-container | |
| runs-on: ubuntu-22.04 | |
| # name: Testing ${{ matrix.os }} (${{ matrix.compiler}}-${{ matrix.r-version }}) | |
| name: Testing in ${{ needs.get-target-container.outputs.CONTAINER }} | |
| # runs-on: ubuntu-latest | |
| container: | |
| image: ${{ vars.CONTAINER_SOURCE }}/${{ needs.get-target-container.outputs.CONTAINER }}/abn:${{ vars.CONTAINER_VERSION || 'latest' }} | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| testfile: ${{ fromJson(needs.gather-tests.outputs.testfiles) }} | |
| env: | |
| R_KEEP_PKG_SOURCE: yes # NOTE Jo: not sure why this is here? | |
| BUILD_LOC: "./build" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Create build location | |
| run: | | |
| mkdir ${{ env.BUILD_LOC }} | |
| shell: bash | |
| - name: Disable renv | |
| run: | | |
| renv::deactivate() | |
| shell: Rscript {0} | |
| - name: Change permissions of configure | |
| run: | | |
| chmod +x configure | |
| shell: bash | |
| - name: Install package dependencies | |
| run: | | |
| devtools::install_deps(pkg = '.', dependencies = TRUE, upgrade='never') | |
| shell: Rscript {0} | |
| - name: Build the package | |
| run: | | |
| devtools::build(pkg = '.', path = '${{ env.BUILD_LOC }}/abn.tar.gz') | |
| shell: Rscript {0} | |
| - name: Install it | |
| run: | | |
| install.packages('${{ env.BUILD_LOC }}/abn.tar.gz', repos=NULL, type="source") | |
| shell: Rscript {0} | |
| - name: Running ${{ matrix.testfile }} | |
| run: | | |
| # since on a test failure devtools::test does not exit with | |
| # non-zero state we test explicitly for failed tests and exit | |
| # accordingly | |
| res=devtools::test_active_file("${{ matrix.testfile }}");df=as.data.frame(res);if(sum(df$failed) > 0 || any(df$error)) {q("no", status=1, FALSE)} | |
| shell: Rscript {0} |