making extra clean titles

furrer-lab · May 17, 2024 · 292ec0e · 292ec0e
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diff --git a/.chglog/CHANGELOG.tpl.md b/.chglog/CHANGELOG.tpl.md
@@ -1,6 +1,8 @@
 {{ range .Versions }}
 <a name="{{ .Tag.Name }}"></a>
-## abn {{ .Tag.Name }} {{ if .Tag.Previous }}[diff]({{ $.Info.RepositoryURL }}/compare/{{ .Tag.Previous.Name }}...{{ .Tag.Name }}){{ else }}{{ .Tag.Name }}{{ end }}
+## abn {{ .Tag.Name }}
+
+{{ if .Tag.Previous }}[diff]({{ $.Info.RepositoryURL }}/compare/{{ .Tag.Previous.Name }}...{{ .Tag.Name }}){{ else }}{{ .Tag.Name }}{{ end }}
 
 > {{ datetime "2006-01-02" .Tag.Date }}
 

diff --git a/NEWS.md b/NEWS.md
@@ -1,6 +1,6 @@
 
 <a name="3.0.8"></a>
-## abn 3.0.8 [diff](https://github.com/furrer-lab/abn/compare/3.0.7...3.0.8)
+# abn 3.0.8 [diff](https://github.com/furrer-lab/abn/compare/3.0.7...3.0.8)
 
 > 2024-05-17
 
@@ -36,7 +36,7 @@
 * Merge pull request [#41](https://github.com/furrer-lab/abn/issues/41) from furrer-lab/7-pipeline-to-publish-pkgdown-site
 
 <a name="3.0.7"></a>
-## abn 3.0.7
+# abn 3.0.7
 
 2024-03-27 Matteo Delucchi
 
@@ -48,7 +48,7 @@
   * Improved documentation, fixed typos and added return values for each function.
   * Added Jonas Liechti as a contributor.
 
-## abn 3.0.6
+# abn 3.0.6
 
 2024-03-21 Matteo Delucchi
 
@@ -69,7 +69,7 @@
   * avoid examples and tests on CRAN that require INLA
   * Restructured the private developement repository to have only one public repo.
 
-## abn 3.0.5
+# abn 3.0.5
 
 2024-01-18 Matteo Delucchi
 
@@ -79,20 +79,20 @@
   * Fixed bug in test of `simulateAbn()` that was failing on CRAN.
   * Increase package availability by skipping tests on CRAN that require INLA. This also speeds up the CRAN checks.
 
-## abn 3.0.4
+# abn 3.0.4
 
 2023-11-03 Matteo Delucchi
 
   * Fixed format issues in source code that caused significant warnings with GCC and clang.
   * Temporary workaround to install the correct versions of INLA dependencies. This will be hopefully fixed in the next release of INLA.
 
-## abn 3.0.3
+# abn 3.0.3
 
 2023-11-03 Matteo Delucchi
 
   * Temporarily fixed tests on CRAN Fedora flavour.
 
-## abn 3.0.2
+# abn 3.0.2
 
 2023-10-23 Matteo Delucchi
 
@@ -102,14 +102,14 @@
   * New CoC and Licence files.
   * Updated examples in documentation.
 
-## abn 3.0.1
+# abn 3.0.1
 
 2023-09-29 Matteo Delucchi
 
   * Patched memory access error in source code.
   * Fixed reverse dependency to `mcmcabn()`.
 
-## abn 3.0.0
+# abn 3.0.0
 
 2023-09-01 Matteo Delucchi
 
@@ -125,7 +125,7 @@
   * Removed deprecated functions.
   * Refactoring here and there. Especially to harmonise `buildScoreCache()` and `fitAbn()` for both methods "mle" and "bayes".
 
-## abn 2.7-0
+# abn 2.7-0
 
 2022-04-02 Reinhard Furrer
 
@@ -149,7 +149,7 @@
 	* Some GSL error now caught at R level.
 	* Severe R and moderate C code cleaning.
 
-## abn 2.6.0
+# abn 2.6.0
 
 2021-06-08 Gilles Kratzer, Reinhard Furrer & Kalina Cherneva
 
@@ -167,7 +167,7 @@
   * Adapting authorship of package
   * Minor cleaning of `Examples` in the help files
 
-## abn 2.5.0
+# abn 2.5.0
 
 2021-04-23 Gilles Kratzer & Reinhard Furrer
 
@@ -177,28 +177,28 @@
   * Major changes in `plotAbn()`
   * Cleaning of several help files
 
-## abn 2.4.0
+# abn 2.4.0
 
 2020-10-31 Gilles Kratzer & Reinhard Furrer
 
   * Update on citations
   * Update on ORCID number
 
-## abn 2.3.0
+# abn 2.3.0
 
 2020-10-22 Gilles Kratzer & Reinhard Furrer
 
   * Requirement for use of R>=4.0.0
 
-## abn 2.2.1
+# abn 2.2.1
 
 2020-06-13 Gilles Kratzer & Reinhard Furrer
 
   * Patch for S4 exports not stated in the package
   * Testing automatic (testhat.R in tests repository)
   * Updated version of the vignette
 
-## abn 2.2
+# abn 2.2
 
 2019-11-22 Gilles Kratzer & Reinhard Furrer
 
@@ -211,14 +211,14 @@
   * Typos in man help files corrected
   * Compiler flags that were not compatible with the Solaris OS
 
-## abn 2.1
+# abn 2.1
 
 2019-07-04 Gilles Kratzer & Reinhard Furrer
 
   * Compiler flags that were not compatible with the Solaris system
   * Note related to INLA
 
-## abn 2.0
+# abn 2.0
 
 2019-07-01 Gilles Kratzer & Reinhard Furrer
 
@@ -237,7 +237,7 @@
   * Dataset: adg
   * Multiple Bugs corrected
 
-## abn 1.2
+# abn 1.2
 
 2018-07-23 Gilles Kratzer
 
@@ -261,108 +261,108 @@
   * modification of existing functions:
   * mostprobable()
 
-## abn 1.0.2
+# abn 1.0.2
 
 2016-11-09 Gilles Kratzer
 
   * Default ban and retain matrix
   * Automatic testing procedure of the package
 
-## abn 1.0
+# abn 1.0
 
 2016-01-11 Pittavino Marta
 
   * New vignette uploaded.
 
-## abn 0.86
+# abn 0.86
 
 2015-12-22 Pittavino Marta
 
   * INLA routine updated, ERROR and NOTE addressed.
 
-## abn 0.85
+# abn 0.85
 
 2014-12-22 Pittavino Marta
 
   * Published Version v0.85 on CRAN
 
-## abn 0.85
+# abn 0.85
 
 2014-12-09 Pittavino Marta
 
   * cleanup file to delete additional Makevars added
 
-## abn 0.85
+# abn 0.85
 
 2014-12-08 Pittavino Marta
 
   * FOSS license --as-cran NOTE addressed, eliminated BuildVignettes NO in the DESCRIPTION file
 
-## abn 0.84
+# abn 0.84
 
 2014-12-06 Pittavino Marta
 
   * v0.84 submitted to CRAN
 
-## abn 0.84
+# abn 0.84
 
 2014-12-05 Pittavino Marta
 
   * dependencies --as-cran NOTE addressed, with .Rprofile
   * graphical issue with Sweave solved
 
-## abn 0.84
+# abn 0.84
 
 2014-12-04 Pittavino Marta
 
   * finished to edit vignette
 
-## abn 0.84
+# abn 0.84
 
 2014-11-23/24 Pittavino Marta
 
   * updating the vignette
 
-## abn 0.84
+# abn 0.84
 
 2014-11-03/04 Pittavino Marta
 
   * issue with Rd2pdf and LaTeX addressed
 
-## abn 0.84
+# abn 0.84
 
 2014-10-27 Pittavino Marta
 
   * installation of local version of abn to text and work with vignette
 
-## abn 0.84
+# abn 0.84
 
 2014-10-23 Pittavino Marta
 
   * confirmation of the change of maintainer
 
-## abn 0.84
+# abn 0.84
 
 2014-10-13 Pittavino Marta
 
   * updated Rclean for file .log and .status
   * check length characters in manual
 
-## abn 0.84
+# abn 0.84
 
 2014-10-06 Pittavino Marta
   * compressed Data with resaveRdaFiles(,compress=c("xz"))
   * solved installing issue (Rclean update)
 
-## abn 0.84
+# abn 0.84
 
 2014-10-03 Pittavino Marta
 
   * alias Rclean extended
   * eliminate old and very old version
   * comment out require(Cairo) line-code
 
-## abn 0.84
+# abn 0.84
 
 2014-10-02 Reinhard Furrer
 
@@ -371,20 +371,20 @@
   * check if last amendments works
   * .gitignore create
 
-## abn 0.84
+# abn 0.84
 
 2014-09-29 Pittavino Marta
 
   * update version
   * rename R function as the one in manual
 
-## abn 0.83
+# abn 0.83
 
 2014-09-26 Pittavino Marta
 
   * update DESCRIPTION
 
-## abn 0.83
+# abn 0.83
 
 2014-09-19 Pittavino Marta