adding udunits for INLA #125

furrer-lab · Jul 11, 2024 · 361d512 · 361d512
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diff --git a/.github/workflows/onlabel_Fedora_setup.yml b/.github/workflows/onlabel_Fedora_setup.yml
@@ -93,6 +93,10 @@ jobs:
       #   run: |
       #     autoconf
 
+      - name: install INLA dependencies
+        run: |
+          dnf -y install udunits2-devel
+
       - name: install INLA
         run: |
             install.packages("INLA", repos = c(CRAN = "https://cran.r-project.org", INLA = "https://inla.r-inla-download.org/R/stable"), dep = TRUE)

diff --git a/.github/workflows/onlabel_Macos_setup.yml b/.github/workflows/onlabel_Macos_setup.yml
@@ -59,6 +59,10 @@ jobs:
             library("rjags")
         shell: Rscript {0}
 
+      - name: install INLA dependencies
+        run: |
+          brew install udunits 
+
       - name: install INLA
         run: |
             install.packages("INLA", repos = c(CRAN = "https://cran.r-project.org", INLA = "https://inla.r-inla-download.org/R/stable"), dep = TRUE)

diff --git a/.github/workflows/onlabel_Ubuntu_setup.yml b/.github/workflows/onlabel_Ubuntu_setup.yml
@@ -80,6 +80,11 @@ jobs:
             library("rjags")
         shell: Rscript {0}
 
+
+      - name: install INLA dependencies
+        run: |
+          sudo apt-get install -y --no-install-recommends libudunits2-dev
+
       - name: install INLA
         run: |
             install.packages("INLA", repos = c(CRAN = "https://cran.r-project.org", INLA = "https://inla.r-inla-download.org/R/stable"), dep = TRUE)

diff --git a/README.md b/README.md
@@ -292,6 +292,41 @@ Below is a list of these dependencies with details on how to install and configu
     `anb` uses INLA to fit some models. 
 
     ### Installation
+
+    INLA needs the [UDUNITS](https://www.unidata.ucar.edu/software/udunits/) C library which needs to be installed first:
+
+    - <details>
+        <summary>Ubuntu</summary>
+
+        Install it with:
+
+        ```bash
+        apt-get install --no-install-recommends libudunits2-dev
+        ```
+
+      </details>
+
+    - <details>
+        <summary>Fedora</summary>
+
+        Install it with:
+
+        ```bash
+        dnf -y install udunits2-devel
+        ```
+
+      </details>
+
+    - <details>
+        <summary>Macos</summary>
+
+        Install it with:
+
+        ```bash
+        brew install udunits 
+        ```
+
+      </details>
 
     The installation is straight forward on common platforms, simply start an R session and run: