-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
1 changed file
with
98 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,98 @@ | ||
# Workflow is triggered on label and check installation on various operating systems | ||
# This action is adapted from https://github.com/t4d-gmbh/stubbed_versioning | ||
name: Windows Install | ||
|
||
on: | ||
push: | ||
branches: | ||
- "main" | ||
- "117-elaborate-if-inla-jags-and-gsl-can-be-installed-via-systemrequirements" | ||
|
||
env: | ||
BUILD_LOC: "./build" | ||
BRANCH: ${{ github.head_ref || github.ref_name }} | ||
JAGS_MAJORV: '4' | ||
JAGS_VERSION: '4.3.1' | ||
JAGS_URL: "https://sourceforge.net/projects/mcmc-jags/files/JAGS" | ||
|
||
permissions: | ||
packages: read | ||
contents: write | ||
pull-requests: write | ||
repository-projects: write | ||
|
||
jobs: | ||
setup-and-install: | ||
name: windows-latest R release | ||
runs-on: windows-latest | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
R_KEEP_PKG_SOURCE: yes | ||
steps: | ||
|
||
- name: install pak | ||
run: | | ||
install.packages('pak', repos=c(CRAN="https://cran.r-project.org")) | ||
shell: Rscript {0} | ||
|
||
- name: install GSL | ||
run: | | ||
Import-Module bitstransfer | ||
New-Item -ItemType Directory -Force -Path "C:\Program Files\cygwin" | ||
start-bitstransfer -source https://cygwin.com/setup-x86_64.exe "C:\Program Files\cygwin\setup-x86_64.exe" | ||
Start-Process -Wait -FilePath "C:\Program Files\cygwin\setup-x86_64.exe" -ArgumentList "--quiet-mode --packages=gsl --site=https://cygwin.mirror.constant.com" -PassThru | ||
- name: install JAGS | ||
run: | | ||
Import-Module bitstransfer | ||
New-Item -ItemType Directory -Force -Path "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}" | ||
start-bitstransfer -source ${{ env.JAGS_URL }}/${{ env.JAGS_MAJORV }}.x/Windows/JAGS-${{ env.JAGS_VERSION }}.exe/download "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}\JAGS-${{ env.JAGS_VERSION }}.exe" | ||
Start-Process -Wait -FilePath "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}\JAGS-${{ env.JAGS_VERSION }}.exe" -ArgumentList "/S" -PassThru | ||
- name: install rjags separately | ||
run: | | ||
Sys.setenv(JAGS_HOME="C:/Program Files/JAGS/JAGS-${{ env.JAGS_VERSION }}") | ||
install.packages("rjags", repos=c(CRAN="https://cran.r-project.org")) | ||
library("rjags") | ||
shell: Rscript {0} | ||
|
||
# - name: install from CRAN with pak | ||
# run: | | ||
# pak::pkg_install('abn', dependencies=TRUE) | ||
# library('abn') | ||
# shell: Rscript {0} | ||
|
||
- name: pak install from GitHub | ||
run: | | ||
pak::repo_add(INLA = "https://inla.r-inla-download.org/R/stable/") | ||
pak::pkg_install("furrer-lab/abn@${{ env.BRANCH }}", dependencies=TRUE) | ||
library('abn') | ||
shell: Rscript {0} | ||
|
||
- name: fetch the repository from GitHub | ||
uses: actions/checkout@v4 | ||
|
||
- name: deactivate the renv | ||
run: | | ||
renv::deactivate() | ||
shell: Rscript {0} | ||
|
||
- name: install from source | ||
run: | | ||
pak::local_install(dependencies=TRUE) | ||
shell: Rscript {0} | ||
|
||
- name: run the tests | ||
run: | | ||
pak::pak('r-lib/testthat') | ||
library("abn") | ||
testthat::test_local(path='tests', load_package='none') | ||
shell: Rscript {0} | ||
|
||
- name: Show checks outcome | ||
if: always() | ||
run: | | ||
echo ::group::Show testthat output | ||
find check -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
echo ::endgroup:: | ||
shell: bash --noprofile --norc -e -o pipefail {0} |