Merge pull request #122 from furrer-lab/120-mac-based-testing

on label install check mac & windows
furrer-lab · Jul 10, 2024 · ec1f05e · ec1f05e
2 parents ead6eee + ceef3ca
commit ec1f05e
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diff --git a/.github/workflows/onlabel_CRAN_checks.yml b/.github/workflows/onlabel_CRAN_checks.yml
@@ -87,10 +87,9 @@ jobs:
         run: |
             renv::deactivate()
         shell: Rscript {0}
-      - name: Change permissions of configure
+      - name: Configure ABN for installation
         run: |
-            chmod +x configure
-        shell: bash
+          autoconf
       - name: Install package dependencies
         run: |
             devtools::install_deps(pkg = '.', dependencies = TRUE, upgrade='never')

diff --git a/.github/workflows/onlabel_Macos_checks.yml b/.github/workflows/onlabel_Macos_checks.yml
@@ -0,0 +1,119 @@
+# Workflow is triggered on label and check installation on various operating systems
+# This action is adapted from https://github.com/t4d-gmbh/stubbed_versioning
+name: On Label Macos Checks
+
+on:
+  pull_request:
+    types: [ labeled ]
+
+env:
+  LABEL_CHECK: 'macos::check'
+  LABEL_SUCCESS: 'macos::passed'
+  LABEL_FAILURE: 'macos::failed'
+  BUILD_LOC: "./build"
+
+permissions:
+  packages: read
+  contents: write
+  pull-requests: write
+  repository-projects: write
+
+jobs:
+  R-CMD-check:
+    if: ${{ github.event.label.name == 'macos::check' }}
+    name: macos-latest (${{ matrix.config.r }})
+    runs-on: macos-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {r: 'release',}
+          # - {r: '4.1',}
+          # - {r: 'devel', http-user-agent: 'release'}
+          # - {r: 'oldrel-1',}
+          # - {r: 'oldrel-2',}
+          # - {r: 'oldrel-3',}
+
+    steps:
+      - name: install dependencies macos
+        run: |
+          brew install pkg-config
+          brew install gsl
+          brew install jags
+          brew install automake  # needed to run autoconf
+          gsl-config --libs
+          gsl-config --cflags
+
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - name: install rjags separately
+        run: |
+          install.packages('rjags', configure.args = '--enable-rpath')
+        shell: Rscript {0}
+
+      - name: Configure ABN for installation
+        run: |
+          autoconf
+
+      - name: Debugging
+        run: |
+          pkg-config --cflags --static jags
+          pkg-config --libs --static jags
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: false
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
+
+  report_macos_checks:
+    if: ${{ (success() || failure()) }}
+    needs:
+      - R-CMD-check
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      pull-requests: write
+      repository-projects: write
+    env:
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      OWNER: ${{ github.repository_owner }}
+      REPO: ${{ github.event.repository.name }}
+    steps:
+      - uses: actions/checkout@v4
+      - name: Check if on demand tasks succeeded
+        run: |
+          gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_CHECK }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+          if [ ${{ needs.R-CMD-check.result }} == "success" ]; then
+            gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_FAILURE }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_SUCCESS }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            echo "### ${{ github.event.label.url }} passed! :rocket:" >> $GITHUB_STEP_SUMMARY
+            exit 0
+          elif [ ${{ needs.R-CMD-check.result }} == "failure" ]; then
+            gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_SUCCESS }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_FAILURE }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            echo "### ${{ github.event.label.url }} failed!" >> $GITHUB_STEP_SUMMARY
+            exit 1
+          else
+            gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_CHECK }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            echo "On demand task outcome was ${{ needs.R-CMD-check.outcome }}"
+          fi
+        shell: bash
+        env:
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          EVENT: ${{ github.event.number }}  # This is either the issue or pr
diff --git a/.github/workflows/onlabel_Windows_checks.yml b/.github/workflows/onlabel_Windows_checks.yml
@@ -0,0 +1,120 @@
+# Workflow is triggered on label and check installation on various operating systems
+# This action is adapted from https://github.com/t4d-gmbh/stubbed_versioning
+name: On Label Windows Checks
+
+on:
+  pull_request:
+    types: [ labeled ]
+
+env:
+  LABEL_CHECK: 'windows::check'
+  LABEL_SUCCESS: 'windows::passed'
+  LABEL_FAILURE: 'windows::failed'
+  BUILD_LOC: "./build"
+  JAGS_MAJORV: '4'
+  JAGS_VERSION: '4.3.1'
+  JAGS_URL: "https://sourceforge.net/projects/mcmc-jags/files/JAGS"
+
+permissions:
+  packages: read
+  contents: write
+  pull-requests: write
+  repository-projects: write
+
+jobs:
+  R-CMD-check:
+    if: ${{ github.event.label.name == 'windows::check' }}
+    name: windows-latest (${{ matrix.config.r }})
+    runs-on: windows-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {r: 'release',}
+          # - {r: '4.1',}
+          - {r: 'devel', http-user-agent: 'release'}
+          - {r: 'oldrel-1',}
+          - {r: 'oldrel-2',}
+          # - {r: 'oldrel-3',}
+
+    steps:
+
+      - name: Install GSL binaries with cygwin
+        uses: cygwin/cygwin-install-action@master
+
+      - name: Install JAGS
+        run: |
+          Import-Module bitstransfer
+          New-Item -ItemType Directory -Force -Path "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}"
+          start-bitstransfer -source ${{ env.JAGS_URL }}/${{ env.JAGS_MAJORV }}.x/Windows/JAGS-${{ env.JAGS_VERSION }}.exe/download  "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}\JAGS-${{ env.JAGS_VERSION }}.exe"
+          Start-Process -Wait -FilePath "C:\Program Files\JAGS\JAGS-${{ env.JAGS_VERSION }}\JAGS-${{ env.JAGS_VERSION }}.exe" -ArgumentList "/S" -PassThru
+
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - name: install JAGS
+        run: |
+            Sys.setenv(JAGS_HOME="C:/Program Files/JAGS/JAGS-${{ env.JAGS_VERSION }}")
+            install.packages("rjags")
+        shell: Rscript {0}
+
+      - name: install JAGS
+        run: |
+            install.packages("INLA", repos = c(getOption("repos"), INLA = "https://inla.r-inla-download.org/R/stable"), dep = TRUE)
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: false
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
+
+  report_windows_checks:
+    if: ${{ (success() || failure()) }}
+    needs:
+      - R-CMD-check
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      pull-requests: write
+      repository-projects: write
+    env:
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      OWNER: ${{ github.repository_owner }}
+      REPO: ${{ github.event.repository.name }}
+    steps:
+      - uses: actions/checkout@v4
+      - name: Check if on demand tasks succeeded
+        run: |
+          gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_CHECK }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+          if [ ${{ needs.R-CMD-check.result }} == "success" ]; then
+            gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_FAILURE }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_SUCCESS }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            echo "### ${{ github.event.label.url }} passed! :rocket:" >> $GITHUB_STEP_SUMMARY
+            exit 0
+          elif [ ${{ needs.R-CMD-check.result }} == "failure" ]; then
+            gh pr edit ${{ env.EVENT }} --remove-label ${{ env.LABEL_SUCCESS }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_FAILURE }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            echo "### ${{ github.event.label.url }} failed!" >> $GITHUB_STEP_SUMMARY
+            exit 1
+          else
+            gh pr edit ${{ env.EVENT }} --add-label ${{ env.LABEL_CHECK }} --repo ${{ env.OWNER }}/${{ env.REPO }}
+            echo "On demand task outcome was ${{ needs.R-CMD-check.outcome }}"
+          fi
+        shell: bash
+        env:
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          EVENT: ${{ github.event.number }}  # This is either the issue or pr