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implement automatic recompilation of the vignettes #50
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Only run the examples (redo the simulations) on a major version bump. On minor version bumps make it optional to run the simulation (i.e. manual trigger of the action) handle this in dedicated action yaml Keep the output in an artifact for later use in the documentation |
this belongs to #81 |
Process: To be implemented: |
consider to use the abn container to avoid installing arbitrary package versions. |
* attempt to rebuild vignettes on label. Addresses #50 * renamed the label * use abn containers as basis. * fixed env was defined twice. * push to current branch * changed branch name to github branch name. * using repo scope token * changed git user to abn-cicd-helper bot * try commit and push with GH action... * try again with the push action * Revert "changed git user to abn-cicd-helper bot" This reverts commit a1396d7. * added directory as safe to fix dubious ownership warning. * removed push origin * use gh cli to checkout PR * in container gh must be installed. On standart runners it would be by default. * add specific sysreqs for INLA installation * added github token to env * add safe directory before checkout of PR * Automated Vignette Compilation * fix mess * commit only recompiled vignettes but nothing else * commit only recompiled vignettes but nothing else * fixed divergent histories * need to install abn package with the newest r-containers! * Automated Vignette Compilation * commit everything within vignettes directory * debugging git add * fix image location * typo * debugging adding png * typo * Automated Vignette Compilation * place plots in the correct folder * removed wrongly placed figures * Automated Vignette Compilation * move them, not copy! * Automated Vignette Compilation * updated interpretation of benchmark plot --------- Co-authored-by: GitHub Vignette Bot <vignettebot@github.com>
Think about how to incorporate this in the pipeline.
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