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add specific sysreqs for INLA installation #139

Merged
merged 75 commits into from
Aug 7, 2024
Merged

add specific sysreqs for INLA installation #139

merged 75 commits into from
Aug 7, 2024

Commits on Jul 25, 2024

  1. add specific sysreqs for INLA installation

    @matteodelucchi
    matteodelucchi committed Jul 25, 2024
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  2. run on this dev branch

    @matteodelucchi
    matteodelucchi committed Jul 25, 2024
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  3. add udunits2 for fedora

    @matteodelucchi
    matteodelucchi committed Jul 25, 2024
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  4. check the package to verify if INLA is installed

    @matteodelucchi
    matteodelucchi committed Jul 25, 2024
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  5. we do not need to test the CRAN here

    @j-i-l
    j-i-l committed Jul 25, 2024
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  6. run checks on HEAD of the branch

    @j-i-l
    j-i-l committed Jul 25, 2024
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  7. no need to install from source

    @j-i-l
    j-i-l committed Jul 25, 2024
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  8. try without gsl install (old DESC file)

    @j-i-l
    j-i-l committed Jul 25, 2024
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  9. only update devtools - for speed

    @j-i-l
    j-i-l committed Jul 25, 2024
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  10. Revert "only update devtools - for speed" 

    This reverts commit c05b5f9.
    @j-i-l
    j-i-l committed Jul 25, 2024
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  11. update only needed packages

    @j-i-l
    j-i-l committed Jul 25, 2024
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  12. go back to updating all

    @j-i-l
    j-i-l committed Jul 25, 2024
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  13. installing from source + checks

    @j-i-l
    j-i-l committed Jul 25, 2024
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Commits on Jul 26, 2024

  1. adding openssl as sysdep

    @j-i-l
    j-i-l committed Jul 26, 2024
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  2. adding curl as sysdep

    @j-i-l
    j-i-l committed Jul 26, 2024
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  3. trying INLA install via sysreq on Ubuntu

    @j-i-l
    j-i-l committed Jul 26, 2024
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  4. trying INLA install via sysreq Fedora

    @j-i-l
    j-i-l committed Jul 26, 2024
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  5. trying INLA install via sysreq Windows

    @j-i-l
    j-i-l committed Jul 26, 2024
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  6. running checks at the end

    @j-i-l
    j-i-l committed Jul 26, 2024
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  7. runnin on dev - to revert

    @j-i-l
    j-i-l committed Jul 26, 2024
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  8. upgrading ubuntu floavors

    @j-i-l
    j-i-l committed Jul 26, 2024
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  9. simpler dependency statemnt (incl. suggests)

    @j-i-l
    j-i-l committed Jul 26, 2024
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  10. also checks on macOS

    @j-i-l
    j-i-l committed Jul 26, 2024
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  11. adding the shlib_openmp_clfags to pkg_libs

    @j-i-l
    j-i-l committed Jul 26, 2024
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  12. addressing warning from checks

    @j-i-l
    j-i-l committed Jul 26, 2024
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  13. bump R6 to dependency so it is installed on cueck_built

    @j-i-l
    j-i-l committed Jul 26, 2024
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  14. include macos for testing

    @j-i-l
    j-i-l committed Jul 26, 2024
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  15. only fail on error

    @j-i-l
    j-i-l committed Jul 26, 2024
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  16. rely on rcmdcheck

    @j-i-l
    j-i-l committed Jul 26, 2024
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  17. removing prev. absent dep again

    @j-i-l
    j-i-l committed Jul 26, 2024
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  18. fix in build args param

    @j-i-l
    j-i-l committed Jul 26, 2024
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  19. adding sf as dependency (>fmesher>INLA)

    @j-i-l
    j-i-l committed Jul 26, 2024
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  20. ingore vignettes

    @j-i-l
    j-i-l committed Jul 26, 2024
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  21. losing Matrix req that requires R > 4.4.0

    @j-i-l
    j-i-l committed Jul 26, 2024
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Commits on Jul 28, 2024

  1. remove dev running condition

    @j-i-l
    j-i-l committed Jul 28, 2024
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  2. install with pak (and thus sysdeps)

    @j-i-l
    j-i-l committed Jul 28, 2024
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  3. install curl for pak

    @j-i-l
    j-i-l committed Jul 28, 2024
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  4. separate step for pak install

    @j-i-l
    j-i-l committed Jul 28, 2024
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  5. including optional deps (i.e. also Suggests)

    @j-i-l
    j-i-l committed Jul 28, 2024
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  6. reverting dep for Matrix

    @j-i-l
    j-i-l committed Jul 28, 2024
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  7. adding INLA repo

    @j-i-l
    j-i-l committed Jul 28, 2024
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  8. cleaning up

    @j-i-l
    j-i-l committed Jul 28, 2024
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  9. try again with adding INLA repo

    @j-i-l
    j-i-l committed Jul 28, 2024
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  10. removing version pinning for Matrix

    @j-i-l
    j-i-l committed Jul 28, 2024
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  11. rely on sysdeps for fedora

    @j-i-l
    j-i-l committed Jul 28, 2024
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  12. ditch biocm specialy install

    @j-i-l
    j-i-l committed Jul 28, 2024
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  13. adding jags as sysdep (for ubuntu)

    @j-i-l
    j-i-l committed Jul 28, 2024
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  14. setup on Ubuntu with pak

    @j-i-l
    j-i-l committed Jul 28, 2024
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  15. removing dev running cond

    @j-i-l
    j-i-l committed Jul 28, 2024
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  16. now with pak

    @j-i-l
    j-i-l committed Jul 28, 2024
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  17. update might not be needed with pak

    @j-i-l
    j-i-l committed Jul 28, 2024
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  18. also adding libcurl for pak install

    @j-i-l
    j-i-l committed Jul 28, 2024
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Commits on Jul 30, 2024

  1. Case sensitivity

    @j-i-l
    j-i-l committed Jul 30, 2024
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  2. expicitely loading data

    @j-i-l
    j-i-l committed Jul 30, 2024
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  3. since tests run isolated - load package first

    @j-i-l
    j-i-l committed Jul 30, 2024
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  4. Merge branch 'main' into 117-elaborate-if-inla-jags-and-gsl-can-be-in… 

    …stalled-via-systemrequirements
    @j-i-l
    j-i-l committed Jul 30, 2024
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Commits on Jul 31, 2024

  1. pak based setup on Fedora

    @j-i-l
    j-i-l committed Jul 31, 2024
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  2. adding Macos pak setup

    @j-i-l
    j-i-l committed Jul 31, 2024
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  3. better output for testthat

    @j-i-l
    j-i-l committed Jul 31, 2024
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  4. Windows setup with pak

    @j-i-l
    j-i-l committed Jul 31, 2024
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Commits on Aug 5, 2024

  1. updated instructions for Linux based systems

    @j-i-l
    j-i-l committed Aug 5, 2024
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  2. updated instructions for Linux based systems

    @j-i-l
    j-i-l committed Aug 5, 2024
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  3. formatting

    @j-i-l
    j-i-l committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. adapting instructions for Mac&Windows

    @j-i-l
    j-i-l committed Aug 6, 2024
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  2. adaptig installing f GH

    @j-i-l
    j-i-l committed Aug 6, 2024
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  3. completing with pak install

    @j-i-l
    j-i-l committed Aug 6, 2024
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  4. adpted installation instructions for pak

    @j-i-l
    j-i-l committed Aug 6, 2024
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  5. cleaning up

    @j-i-l
    j-i-l committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. keep only intallation steps

    @j-i-l
    j-i-l committed Aug 7, 2024
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  2. renaming

    @j-i-l
    j-i-l committed Aug 7, 2024
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  3. adapting setup batches

    @j-i-l
    j-i-l committed Aug 7, 2024
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  4. cleaning up

    @j-i-l
    j-i-l committed Aug 7, 2024
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  5. corrected naming

    @j-i-l
    j-i-l committed Aug 7, 2024
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  6. typo

    @j-i-l
    j-i-l committed Aug 7, 2024
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  7. completing from source install

    @j-i-l
    j-i-l committed Aug 7, 2024
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