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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 214 114

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 183 47

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 96 93

  4. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    82 38

  5. task-execution-schemas task-execution-schemas Public

    80 27

  6. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 77 32

Repositories

Showing 10 of 120 repositories
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Python 0 Apache-2.0 2 5 1 Updated Jun 30, 2024
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 77 Apache-2.0 32 38 3 Updated Jun 30, 2024
  • gks-common Public

    Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)

    ga4gh/gks-common’s past year of commit activity
    Makefile 2 Apache-2.0 0 6 0 Updated Jun 30, 2024
  • workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    ga4gh/workflow-execution-service-schemas’s past year of commit activity
    82 Apache-2.0 38 49 4 Updated Jun 28, 2024
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 14 2 96 (1 issue needs help) 2 Updated Jun 26, 2024
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 46 Apache-2.0 26 45 (2 issues need help) 0 Updated Jun 26, 2024
  • drs-compliance-suite Public

    Tests to verify the compliance of a DRS implementation with GA4GH DRS specification

    ga4gh/drs-compliance-suite’s past year of commit activity
    Python 0 Apache-2.0 1 8 5 Updated Jun 26, 2024
  • cat-vrs-python Public

    GA4GH Categorical Variation Representation Python Implementation

    ga4gh/cat-vrs-python’s past year of commit activity
    Makefile 0 Apache-2.0 1 1 1 Updated Jun 26, 2024
  • data-repository-service-schemas Public

    A repository for the schemas used for the Data Repository Service.

    ga4gh/data-repository-service-schemas’s past year of commit activity
    60 Apache-2.0 52 64 23 Updated Jun 24, 2024
  • gks-clinvar Public

    A submission tool for submitting to the ClinVar Submission API using GA4GH GKS data

    ga4gh/gks-clinvar’s past year of commit activity
    0 Apache-2.0 0 9 4 Updated Jun 24, 2024
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