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Added enformer predictor #2

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@gtsitsiridis gtsitsiridis marked this pull request as draft August 12, 2024 16:39
@gtsitsiridis gtsitsiridis marked this pull request as ready for review August 12, 2024 17:08
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@Hoeze Hoeze left a comment

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Looks good! Overall quite clean.
I made some comments and asked for minor changes.
We also need to put your veff repo into the Gagneurlab org, and maybe change its name...

- tensorflow==2.16.1
- tensorflow-gpu==2.16.1
- pip:
- "git+https://github.com/gtsitsiridis/kipoi_veff_analysis.git@master"
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We need to move this repo to the gagneurlab team

- tensorflow-hub==0.16.1
- tensorflow==2.16.1
- pip:
- "git+https://github.com/gtsitsiridis/kipoi_veff_analysis.git@master"
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move to gagneurlab

scripts/fset@abexp_v1.0.yaml Outdated Show resolved Hide resolved
scripts/veff/enformer/scripts/gtf2parquet.py Outdated Show resolved Hide resolved
scripts/veff/enformer/enformer_vcf.smk Outdated Show resolved Hide resolved
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I addressed the comments above. We still need to move the repo to the gagneurlab team.

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2 participants