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Merge external FRASER counts #169

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Merge external FRASER counts #169

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Commits on Feb 10, 2021

  1. initial merge of external splicing counts for FRASER

    @c-mertes
    c-mertes committed Feb 10, 2021
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  2. fix download and add more test cases

    @c-mertes
    c-mertes committed Feb 10, 2021
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  3. fix test

    @c-mertes
    c-mertes committed Feb 10, 2021
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  4. fix wget download and heatmap plotting

    @c-mertes
    c-mertes committed Feb 10, 2021
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Commits on Feb 22, 2021

  1. major revision of the aberrant splicing pipeline 

    mostly incorporating the new merging functionality of external counts
    @c-mertes
    c-mertes committed Feb 22, 2021
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  2. fix setAutoBPPARAM function and some cleanup

    @c-mertes
    c-mertes committed Feb 22, 2021
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  3. force to write HDF5 file

    @c-mertes
    c-mertes committed Feb 22, 2021
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Commits on Feb 23, 2021

  1. fix knitr/tidyr loading and force to write HDF5

    @c-mertes
    c-mertes committed Feb 23, 2021
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Commits on Feb 24, 2021

  1. remove the dependency on the count matrices as they get rewritten

    @c-mertes
    c-mertes committed Feb 24, 2021
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Commits on Jul 14, 2021

  1. merge dev into merge_exFRASER_counts branch. 

    Merge branch 'dev' into merge_exFRASER_counts

# Conflicts:
#	drop/config/SampleAnnotation.py
#	drop/config/submodules/AberrantSplicing.py
#	drop/demo/sample_annotation_relative.tsv
#	drop/download_data.sh
#	drop/modules/aberrant-splicing-pipeline/FRASER/07_extract_results_FraseR.R
#	drop/utils.py
    @c-mertes
    c-mertes committed Jul 14, 2021
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Commits on Aug 11, 2021

  1. Merge branch 'dev' into merge_exFRASER_counts

    @c-mertes
    c-mertes committed Aug 11, 2021
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