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correct dependency to snakemake #22

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correct dependency to snakemake #22

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c-mertes
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Since the SNAKEFILE_CHOICES variable is used we have to depend on snakemake>=5.5.1

pip install wbuild snakemake
Requirement already satisfied: wbuild in /home/mertes/miniconda3/lib/python3.6/site-packages (1.6.4)
Requirement already satisfied: snakemake in /home/mertes/miniconda3/lib/python3.6/site-packages (3.13.3)
Requirement already satisfied: click-log in /home/mertes/miniconda3/lib/python3.6/site-packages (from wbuild) (0.3.2)
Requirement already satisfied: PyYAML>=4.2b1 in /home/mertes/miniconda3/lib/python3.6/site-packages (from wbuild) (5.1)
Requirement already satisfied: Click>=6.0 in /home/mertes/miniconda3/lib/python3.6/site-packages (from wbuild) (7.0)
Requirement already satisfied: wrapt in /home/mertes/miniconda3/lib/python3.6/site-packages (from snakemake) (1.11.1)
Requirement already satisfied: requests in /home/mertes/miniconda3/lib/python3.6/site-packages (from snakemake) (2.21.0)Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/mertes/miniconda3/lib/python3.6/site-packages (from requests->snakemake) (3.0.4)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /home/mertes/miniconda3/lib/python3.6/site-packages (from requests->snakemake) (1.24.2)
Requirement already satisfied: idna<2.9,>=2.5 in /home/mertes/miniconda3/lib/python3.6/site-packages (from requests->snakemake) (2.8)
Requirement already satisfied: certifi>=2017.4.17 in /home/mertes/miniconda3/lib/python3.6/site-packages (from requests->snakemake) (2019.3.9)
(base) mertes@DESKTOP-MB70GOB:~/projects/FraseR-analysis$ wbuild update
Traceback (most recent call last):
  File "/home/mertes/miniconda3/bin/wbuild", line 6, in <module>
    from wbuild.cli import main
  File "/home/mertes/miniconda3/lib/python3.6/site-packages/wbuild/__init__.py", line 10, in <module>
    from . import autolink
  File "/home/mertes/miniconda3/lib/python3.6/site-packages/wbuild/autolink.py", line 6, in <module>
    from wbuild.utils import Config
  File "/home/mertes/miniconda3/lib/python3.6/site-packages/wbuild/utils.py", line 12, in <module>
    from snakemake import get_argument_parser, parse_config, SNAKEFILE_CHOICES
ImportError: cannot import name 'SNAKEFILE_CHOICES'

@c-mertes c-mertes requested a review from kTakumo October 31, 2019 10:33
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Additionally I added some extras to the wBuildParser2.R for better handling of options and wildcards

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@kTakumo kTakumo Awaiting requested review from kTakumo

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