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Ipynb rendering #23

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#17

stefanches7 added 18 commits December 11, 2019 14:51
Add .ipynb YAML header parsing functionality
1bdbdf2
Remove code duplication of parse R files function
00f3ab6
Add parsing ipynb data to separate variable
1431859 
additional: make documentation more clear at places
YAML parsing from everywhere in text (not only header), including Rmd…
6dde360 
… files
knit only R scripts
cd64a98
jupytext conversion skeleton
f9ffe73
fill comments/remove boilerplate commented code7
6ded6dc
convert .ipynb to .Rmd using jupytext
7b65ba0
Bump version: 1.6.4 → 1.6.5
3e01365
hasYAMLHeader update
17fb7da
Bump version: 1.6.5 → 1.6.6
3ec7208
fixup! Remove code duplication of parse R files function
5563256
Bump version: 1.6.6 → 1.6.7
338edf8
fixup! YAML parsing from everywhere in text (not only header), includ…
9c11606 
…ing Rmd files
Bump version: 1.6.7 → 1.6.8
dcddb32
fixup! Add .ipynb YAML header parsing functionality
a84653c
Ipynb rendering to HTML; version 1.6.8->1.6.10
c2e2184
add .Rmd files to index
9463734
@stefanches7 stefanches7 requested review from Hoeze, Avsecz, c-mertes and kTakumo and removed request for Avsecz January 17, 2020 16:34
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stefanches7 commented Jan 17, 2020 •
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Thanks to @Hoeze, I've really exploited the abilities of jupytext to launch in CLI and convert .ipynbs to .Rmds first, then just add .Rmd rules.
What is lacking up to moment is any access to snakemake object - is there the way to do it from python somehow while in the pipeline (note that from Rmarkdown it now calls python code using reticulate), or should we use the old good parseWBHeader for this?

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@Hoeze Hoeze Awaiting requested review from Hoeze

@c-mertes c-mertes Awaiting requested review from c-mertes

@kTakumo kTakumo Awaiting requested review from kTakumo

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