GATK workflows
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- Cambridge, MA USA
- https://gatk.broadinstitute.org
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- gatk4-data-processing Public
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
gatk-workflows/gatk4-data-processing’s past year of commit activity - gatk4-rnaseq-germline-snps-indels Public
Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
gatk-workflows/gatk4-rnaseq-germline-snps-indels’s past year of commit activity - gatk4-genome-processing-pipeline Public archive
Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the link the ReadMe to obtain the latest version of the workflow.
gatk-workflows/gatk4-genome-processing-pipeline’s past year of commit activity - gatk4-exome-analysis-pipeline Public archive
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
gatk-workflows/gatk4-exome-analysis-pipeline’s past year of commit activity - gatk4-basic-joint-genotyping Public
Basic joint genotyping with GATK4. NOT Best Practices, only for teaching/demo purposes.
gatk-workflows/gatk4-basic-joint-genotyping’s past year of commit activity
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