pixi-rpy issues

[Robinlovelace]

After all the effort getting it working, seems that there are some issues with the image:

• Image size (2.7 vs 2.2 GB for pixi-based vs Rocker-based)

|

From:

• Not currently working:

docker run -it pixi-rpy
bash: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
root@a5c3b960b699:/# R  
bash: R: command not found
root@a5c3b960b699:/# /        
.dockerenv  bin/        dev/        home/       lib64/      mnt/        proc/       run/        srv/        tmp/        var/        
.pixi/      boot/       etc/        lib/        media/      opt/        root/       sbin/       sys/        usr/        
root@a5c3b960b699:/# .pixi/envs/default/
bin/                         conda-meta/                  include/                     man/                         ssl/                         x86_64-conda_cos6-linux-gnu/ 
cmake/                       etc/                         lib/                         sbin/                        var/                         
compiler_compat/             fonts/                       libexec/                     share/                       x86_64-conda-linux-gnu/      
root@a5c3b960b699:/# .pixi/envs/default/
bin/                         conda-meta/                  include/                     man/                         ssl/                         x86_64-conda_cos6-linux-gnu/ 
cmake/                       etc/                         lib/                         sbin/                        var/                         
compiler_compat/             fonts/                       libexec/                     share/                       x86_64-conda-linux-gnu/      
root@a5c3b960b699:/# .pixi/envs/default/bin/
Display all 629 possibilities? (y or n)
root@a5c3b960b699:/# .pixi/envs/default/bin/R

R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-conda-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C" 
2: Setting LC_COLLATE failed, using "C" 
3: Setting LC_TIME failed, using "C" 
4: Setting LC_MESSAGES failed, using "C" 
5: Setting LC_MONETARY failed, using "C" 
6: Setting LC_PAPER failed, using "C" 
7: Setting LC_MEASUREMENT failed, using "C" 

 *** caught segfault ***
address (nil), cause 'memory not mapped'

Possible actions:

From:

docker/pixi-rpy/Dockerfile

Lines 1 to 4 in ead3bd3

	FROM ghcr.io/geocompx/docker:pixi-r
	# Todo: Find a way to auto-generate this from environment.yml/requirements.txt:
	RUN pixi global install python xarray matplotlib folium rasterio r-reticulate
	RUN ln -s /root/.pixi/bin/* /usr/local/bin