Update job template

hisplan · Aug 31, 2021 · 4066b60 · 4066b60
1 parent a5906ea
commit 4066b60
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Showing 4 changed files with 20 additions and 20 deletions.
diff --git a/config/template.inputs.json b/config/template.inputs.json
@@ -0,0 +1,11 @@
+{
+    "Velopipe2.sampleName": "test_sample1",
+    "Velopipe2.filteredBarcodes": "s3://.../filtered-barcodes.csv",
+    "Velopipe2.bam": "s3://.../seqc-results/test_sample1_Aligned.out.bam",
+    "Velopipe2.numOfChunks": 20,
+    "Velopipe2.gtf": "s3://seqc-public/genomes/hg38_long_polya/annotations.gtf",
+    "Velopipe2.fullBarcodeWhitelist": "s3://seqc-public/barcodes/ten_x_v3/flat/3M-february-2018.txt",
+    "Velopipe2.cbCorrection": "s3://.../seqc-results/test_sample1_cb-correction.csv.gz",
+    "Velopipe2.umiCorrection": "s3://.../seqc-results/test_sample1_umi-correction.csv.gz",
+    "Velopipe2.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+}
diff --git a/config/template.labels.json b/config/template.labels.json
@@ -0,0 +1,9 @@
+{
+    "pipelineType": "Velopipe2",
+    "project": "YOUR_PROJECT_NAME",
+    "sample": "YOUR_SAMPLE_NAME",
+    "owner": "YOUR_USER_ID",
+    "destination": "s3://.../velopipe/",
+    "transfer": "-",
+    "comment": ""
+}
diff --git a/config/test2.inputs.aws.json b/config/test2.inputs.aws.json
diff --git a/config/test2.labels.aws.json b/config/test2.labels.aws.json