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# update tutorials #244
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name: build_and_test | |
on: | |
push: | |
branches: | |
- main | |
workflow_dispatch: | |
jobs: | |
build_and_test: | |
runs-on: ubuntu-22.04 | |
timeout-minutes: 60 | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup conda, install packages, and test orthomap | |
run: | | |
sudo apt-get update | |
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | |
bash miniconda.sh -b -p $HOME/miniconda | |
source "$HOME/miniconda/etc/profile.d/conda.sh" | |
hash -r | |
conda config --set always_yes yes --set changeps1 no | |
#conda update -q conda | |
# Useful for debugging any issues with conda | |
conda info -a | |
# activate basic env | |
conda activate | |
conda install -c conda-forge mamba | |
# mamba create env | |
mamba env create -q --file environment.yml | |
# activate orthomap env | |
conda activate orthomap_env | |
# Check pip | |
echo pip_path | |
which pip | |
# Install orthomap | |
pip install . | |
# Show installed package | |
conda list | |
# command to run tests | |
pytest -v |