This repository has been archived by the owner on Nov 20, 2023. It is now read-only.

# update tutorials #245

	name: build_and_test

	on:
	push:
	branches:
	- main
	workflow_dispatch:

	jobs:
	build_and_test:
	runs-on: ubuntu-22.04
	timeout-minutes: 60
	steps:
	- uses: actions/checkout@v2
	- name: Setup conda, install packages, and test orthomap
	run: \|
	sudo apt-get update
	wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
	bash miniconda.sh -b -p $HOME/miniconda
	source "$HOME/miniconda/etc/profile.d/conda.sh"
	hash -r
	conda config --set always_yes yes --set changeps1 no
	#conda update -q conda
	# Useful for debugging any issues with conda
	conda info -a
	# activate basic env
	conda activate
	conda install -c conda-forge mamba
	# mamba create env
	mamba env create -q --file environment.yml
	# activate orthomap env
	conda activate orthomap_env

	# Check pip
	echo pip_path
	which pip
	# Install orthomap
	pip install .
	# Show installed package
	conda list
	# command to run tests
	pytest -v

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