# added Paul 2015 example

kullrich · Sep 21, 2023 · ce57f95 · ce57f95
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diff --git a/docs/notebooks/frog_example.ipynb b/docs/notebooks/frog_example.ipynb
@@ -5,7 +5,7 @@
    "id": "1ed2f1df",
    "metadata": {},
    "source": [
-    "# Case study: re-analysis of frog (*Xenopus tropicalis*) single-cell data\n",
+    "# Case study: re-analysis of frog (*Xenopus tropicalis*) embryogenesis single-cell data\n",
     "\n",
     "This notebook will demonstrate scRNA-seq processing with orthomap using frog scRNA data from ([Briggs et al. 2018](https://doi.org/10.1126/science.aar5780); [Qiu et al., 2022](https://doi.org/10.1038/s41588-022-01018-x)).\n",
     "\n",

diff --git a/docs/notebooks/zebrafish_example.ipynb b/docs/notebooks/zebrafish_example.ipynb
@@ -5,7 +5,7 @@
    "id": "e7faac6f",
    "metadata": {},
    "source": [
-    "# Case study: re-analysis of zebrafish (*Danio rerio*) single-cell data\n",
+    "# Case study: re-analysis of zebrafish (*Danio rerio*) embryogenesis single-cell data\n",
     "\n",
     "This notebook will demonstrate scRNA-seq processing with `orthomap` using zebrafish scRNA data from ([Farrell et al., 2018](https://doi.org/10.1126/science.aar3131); [Wagner et al., 2018](https://doi.org/10.1126/science.aar4362); [Qiu et al., 2022](https://doi.org/10.1038/s41588-022-01018-x)).\n",
     "\n",

diff --git a/docs/tutorials/frog_example.rst b/docs/tutorials/frog_example.rst
@@ -1,10 +1,10 @@
 .. _frog_example:
 
-frog - case study
-=================
+frog embryogenesis - case study
+===============================
 
-*Xenopus tropicalis* single-cell data analysis example
-------------------------------------------------------
+*Xenopus tropicalis* embryogenesis single-cell data analysis example
+--------------------------------------------------------------------
 
 Please download the notebooks from `here <https://raw.githubusercontent.com/kullrich/orthomap/main/docs/notebooks/frog_example.ipynb>`_ .
 Or please click below to view the content.

diff --git a/docs/tutorials/index.rst b/docs/tutorials/index.rst
@@ -140,6 +140,7 @@ This section contains different downstream analysis options (Step 5).
 Case studies
 ============
 
+- :doc:`paul15_example`: Notebook - *Mus musculus* hematopoiesis scRNA data example.
 - :doc:`nematode_example`: Notebook - *Caenorhabditis elegans* scRNA data example.
 - :doc:`zebrafish_example`: Notebook - *Danio rerio* scRNA data example.
 - :doc:`frog_example`: Notebook - *Xenopus tropicalis* scRNA data example.

diff --git a/docs/tutorials/zebrafish_example.rst b/docs/tutorials/zebrafish_example.rst
@@ -1,10 +1,10 @@
 .. _zebrafish_example:
 
-zebrafish - case study
-======================
+zebrafish embryogenesis - case study
+====================================
 
-*Danio rerio* single-cell data analysis example
------------------------------------------------
+*Danio rerio* embryogenesis single-cell data analysis example
+-------------------------------------------------------------
 
 Please download the notebooks from `here <https://raw.githubusercontent.com/kullrich/orthomap/main/docs/notebooks/frog_example.ipynb>`_ .
 Or please click below to view the content.