-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Ke Hu
committed
Jul 26, 2015
1 parent
67f9c5a
commit 8871d24
Showing
29 changed files
with
1,902 additions
and
1,789 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
33 changes: 16 additions & 17 deletions
33
BSPAT/testFiles/experiment1/LOC440034_bismark.analysis.filtered.txt
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,18 +1,17 @@ | ||
methylationString ID originalSequence BisulfiteConversionRate methylationRate sequenceIdentity | ||
CGAGGATGGCTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGCT ref | ||
null HWUSI-EAS149L_0095_FC:1:45:8236:15678#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTT 0.8461538461538461 0.0 0.9852941176470589 | ||
null HWUSI-EAS149L_0095_FC:1:100:17798:18841#0/1 TGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTTTTATTGCGAAGTAGGCAATCTGCT 0.5384615384615384 0.6666666666666666 0.9852941176470589 | ||
null HWUSI-EAS149L_0095_FC:1:102:6429:20030#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTT 0.8461538461538461 0.0 0.9852941176470589 | ||
null HWUSI-EAS149L_0095_FC:1:16:10711:3552#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTATCTATTGTGAAGTAGGTAATTTGTT 0.8461538461538461 0.0 0.9705882352941176 | ||
null HWUSI-EAS149L_0095_FC:1:3:9813:11300#0/1 TGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGCGAAGTAGGCGATCTGTT 0.8461538461538461 0.6666666666666666 0.9852941176470589 | ||
null HWUSI-EAS149L_0095_FC:1:28:10595:18151#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGCAGCAGGCGATTTGTT 0.8461538461538461 0.6666666666666666 0.9852941176470589 | ||
null HWUSI-EAS149L_0095_FC:1:49:14392:11160#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTT 0.8461538461538461 0.0 0.9852941176470589 | ||
null HWUSI-EAS149L_0095_FC:1:43:13278:8414#0/1 CGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTT 0.8461538461538461 0.3333333333333333 0.9852941176470589 | ||
null HWUSI-EAS149L_0095_FC:1:108:11439:20961#0/1 TGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACCTTTTATTGCGAAGTAGGCAATCTGCT 0.5384615384615384 0.6666666666666666 0.9705882352941176 | ||
null HWUSI-EAS149L_0095_FC:1:3:13101:10743#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTGTT 0.8461538461538461 0.6666666666666666 1.0 | ||
null HWUSI-EAS149L_0095_FC:1:110:3817:10383#0/1 TGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGTT 0.8461538461538461 0.6666666666666666 1.0 | ||
null HWUSI-EAS149L_0095_FC:1:45:18827:9589#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTCTATTGTGAAGTAGGTGATTTGTT 0.8461538461538461 0.0 1.0 | ||
null HWUSI-EAS149L_0095_FC:1:52:8098:9795#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTCTCATTGTGAAGTAGGTAATTTGTT 0.8461538461538461 0.0 0.9705882352941176 | ||
null HWUSI-EAS149L_0095_FC:1:107:11427:9924#0/1 TGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTGGGTAATTTGTT 0.8461538461538461 0.0 0.9705882352941176 | ||
null HWUSI-EAS149L_0095_FC:1:28:8044:6247#0/1 TGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGCAGGTAATTTGTT 0.8461538461538461 0.0 0.9852941176470589 | ||
null HWUSI-EAS149L_0095_FC:1:57:5987:11522#0/1 TGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTTTTATTGCGAAGTAGGCAATCTGCT 0.5384615384615384 0.6666666666666666 0.9852941176470589 | ||
-----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:45:8236:15678#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTT 0.8888888888888888 0.0 0.989010989010989 | ||
----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:100:17798:18841#0/1 ATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTTTTATTGCGAAGTAGGCAATCTGCTCG 0.6470588235294117 0.75 0.989010989010989 | ||
-----------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:102:6429:20030#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTTG 0.8888888888888888 0.0 0.9891304347826086 | ||
-------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:16:10711:3552#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTATCTATTGTGAAGTAGGTAATTTGTTT 0.8888888888888888 0.0 0.978494623655914 | ||
----------------------**---------------------------------------------------@@-------@@-------** HWUSI-EAS149L_0095_FC:1:3:9813:11300#0/1 ATTTTTAATGAGGGAGGAGGTTTGGGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTTACTGCGAAGTAGGCGATCTGTTTG 0.8823529411764706 0.5 0.989010989010989 | ||
--------------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:28:10595:18151#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGCAGCAGGCGATTTGTTCG 0.8888888888888888 0.75 0.9894736842105263 | ||
------------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:49:14392:11160#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTT 0.8888888888888888 0.0 0.9891304347826086 | ||
------------------------@@---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:43:13278:8414#0/1 ATATTTTTAATGAGGGAGGAGGTTCGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTACTTTCTATTGTGAAGTAGGTAATTTGTTTG 0.8888888888888888 0.25 0.989247311827957 | ||
-----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:108:11439:20961#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACCTTTTATTGCGAAGTAGGCAATCTGCT 0.6666666666666667 0.6666666666666666 0.978021978021978 | ||
-----------------------**---------------------------------------------------@@-------@@------- HWUSI-EAS149L_0095_FC:1:3:13101:10743#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTTTATTGCGAAGTAGGCGATCTGTT 0.8888888888888888 0.6666666666666666 1.0 | ||
------------------------**---------------------------------------------------@@-------@@-------* HWUSI-EAS149L_0095_FC:1:110:3817:10383#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTATTTTTCATTGCGAAGTAGGCGATTTGTTT 0.8888888888888888 0.5 1.0 | ||
--------------------------**---------------------------------------------------**-------**-------** HWUSI-EAS149L_0095_FC:1:45:18827:9589#0/1 AAATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTCATTTTCTATTGTGAAGTAGGTGATTTGTTTG 0.8888888888888888 0.0 1.0 | ||
-----------------------**---------------------------------------------------**-------**-------* HWUSI-EAS149L_0095_FC:1:52:8098:9795#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGGTTATTTCTCATTGTGAAGTAGGTAATTTGTTT 0.8888888888888888 0.0 0.978021978021978 | ||
------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:107:11427:9924#0/1 ATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTTTACTTTTTATTGTGAAGTGGGTAATTTGTT 0.8888888888888888 0.0 0.9782608695652174 | ||
-------------------------**---------------------------------------------------**-------**------- HWUSI-EAS149L_0095_FC:1:28:8044:6247#0/1 AATATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGATTGGAGGAGAAGGTTTATTTTTCATTGTGAAGCAGGTAATTTGTT 0.8888888888888888 0.0 0.989247311827957 | ||
-----------------------**---------------------------------------------------@@-------@@-------@@ HWUSI-EAS149L_0095_FC:1:57:5987:11522#0/1 TATTTTTAATGAGGGAGGAGGTTTGAGGATGGTTGGGTTTGATTTATGACTGGAGGAGAAGGTCCACTTTTTATTGCGAAGTAGGCAATCTGCTCG 0.6666666666666667 0.75 0.9891304347826086 |
Oops, something went wrong.