Update main.nf

main.nf

@@ -55,6 +55,7 @@ numberFilesForProcessA = params.filesProcessA
 processAWriteToDiskMb = params.processAWriteToDiskMb
 processAInput = Channel.from([1] * numberRepetitionsForProcessA)
 processAInputFiles = Channel.fromPath("${params.dataLocation}/**${params.fileSuffix}").take( numberRepetitionsForProcessA )
+multiDockerConfig = Channel.fromPath(params.multidocker_config)
 
 process processA {
 	publishDir "${params.output}/${task.hash}/", mode: 'copy'
@@ -63,13 +64,15 @@ process processA {
 	input:
 	val x from processAInput
 	file(a_file) from processAInputFiles
+	file(multiDockerConfig) from multiDockerConfig
 
 	output:
 	val x into processAOutput
 	val x into processCInput
 	val x into processDInput
 	file "*.txt"
 	file("command-logs") optional true
+	file("multidocker.config")
 
 	script:
 	"""
@@ -85,6 +88,7 @@ process processA {
 	echo "task cpus: ${task.cpus}"
 
 	${params.savescript}
+	cp $multiDockerConfig multidocker.config
 	"""
 }