Private ips setup

conf/google.config

@@ -9,5 +9,6 @@ google {
     zone = params.zone
     network = params.network
     subnetwork = params.subnetwork
+    lifeSciences.usePrivateAddress = params.gls_usePrivateAddress
+    google.lifeSciences.sshDaemon = params.gls_sshDaemon
 }
-

main.nf

@@ -27,6 +27,14 @@ log.info "container                             : ${params.container}"
 log.info "maxForks                              : ${params.maxForks}"
 log.info "queueSize                             : ${params.queueSize}"
 log.info "executor                              : ${params.executor}"
+if(params.executor == 'google-lifesciences') {
+log.info "gls_bootDiskSize                      : ${params.gls_bootDiskSize}"
+log.info "gls_preemptible                       : ${params.gls_preemptible}"
+log.info "gls_usePrivateAddress                 : ${params.gls_usePrivateAddress}"
+log.info "zone                                  : ${params.zone}"
+log.info "network                               : ${params.network}"
+log.info "subnetwork                            : ${params.subnetwork}"
+}
 log.info ""
 
 numberRepetitionsForProcessA = params.repsProcessA

nextflow.config

@@ -3,6 +3,9 @@ docker.enabled = true
 // NOTE: 
 // Initialise the values of the params to the preferred default value or to false
 params {
+	processA_memory = '4.GB'
+	processA_cpus = 1
+	processA_disk = '20.GB'
 	mainScript = 'main.nf'
 	defaultBranch = 'stage-s3-files'
 	config = 'conf/standard.config'
@@ -23,7 +26,6 @@ params {
 
 	echo = false
 	cpus = 1
-	processA_cpus = 1
 	errorStrategy = 'ignore'
 	container = 'quay.io/lifebitai/ubuntu:18.10'
 	maxForks = 200
@@ -32,6 +34,8 @@ params {
 	executor = 'ignite'
 
 	// google-lifesciences
+	gls_usePrivateAddress = false
+	gls_sshDaemon = false
 	gls_bootDiskSize = '50.GB'
 	gls_preemptible = true
 	zone = 'us-east1-b'
@@ -56,7 +60,9 @@ process {
     errorStrategy = params.errorStrategy
 
     withName: processA {
+        disk = params.processA_disk
 	cpus = params.processA_cpus
+	memory = params.processA_memory
 	}
 }
 
@@ -70,4 +76,4 @@ manifest {
     description = 'A stampede of processes at your fingertips'
     mainScript = params.mainScript
     defaultBranch = params.defaultBranch
-}
+}