Merge pull request #67 from noelmcloughlin/fix3

feat(makefile): support custom generator config

README.md

@@ -109,13 +109,10 @@ For more docs, see
 
 ### Step 4: Setup the LinkML project
 
-Optionally set project generation environment variables
-(see `gen-doc --help` and `gen-project --help`):
+Optionally, pass custom configuration to linkml generators by tuning the global configuration file 'config.yaml' with preferred options. An example file is supplied by the project to illustrate interface and defaults.
+
+Additionally, pass command-line arguments to linkml generators inside the Makefile via environment variables in 'config.env' file. An example file is supplied by the project, passing '--config-file config.yaml' to gen-project.
 
-```bash
-export LINKML_COOKIECUTTER_GEN_DOC_ARGS=--no-mergeimports      # example
-export LINKML_COOKIECUTTER_GEN_PROJECT_ARGS=--no-mergeimports  # example
-```
 
 Change to the folder your generated project is in
 

{{cookiecutter.project_name}}/Makefile

@@ -22,14 +22,16 @@ SHEET_TABS = $(shell ${SHELL} ./utils/get-value.sh google_sheet_tabs)
 SHEET_MODULE_PATH = $(SOURCE_SCHEMA_DIR)/$(SHEET_MODULE).yaml
 
 # environment variables
+include config.env
+
 GEN_PARGS =
-ifdef LINKML_COOKIECUTTER_GEN_PROJECT_ARGS
-GEN_PARGS = ${LINKML_COOKIECUTTER_GEN_PROJECT_ARGS}
+ifdef LINKML_GENERATORS_PROJECT_ARGS
+GEN_PARGS = ${LINKML_GENERATORS_PROJECT_ARGS}
 endif
 
 GEN_DARGS =
-ifdef LINKML_COOKIECUTTER_GEN_DOC_ARGS
-GEN_DARGS = ${LINKML_COOKIECUTTER_GEN_DOC_ARGS}
+ifdef LINKML_GENERATORS_MARKDOWN_ARGS
+GEN_DARGS = ${LINKML_GENERATORS_MARKDOWN_ARGS}
 endif
 
 

{{cookiecutter.project_name}}/config.env

@@ -0,0 +1,8 @@
+LINKML_GENERATORS_PROJECT_ARGS=--config-file config.yaml
+
+### Extra layer of configuration for Makefile beyond
+### what 'gen-project --config-file config.yaml' provides.
+### Uncomment and set environment variables as needed.
+
+# LINKML_GENERATORS_MARKDOWN_ARGS=--no-mergeimports
+

{{cookiecutter.project_name}}/config.yaml

@@ -0,0 +1,41 @@
+# Configuration of generators (defaults illustrated)
+---
+generator_args:
+  excel:
+    mergeimports: true
+  owl:
+    mergeimports: true
+    metaclasses: true
+    type_objects: true
+    # throws 'Cannot handle metadata profile: rdfs'
+    # metadata_profile: rdfs
+  markdown:
+    mergeimports: true
+  graphql:
+    mergeimports: true
+  java:
+    mergeimports: true
+    metadata: true
+  jsonld:
+    mergeimports: true
+  jsonschema:
+    mergeimports: true
+  jsonldcontext:
+    mergeimports: true
+  python:
+    mergeimports: true
+  prefixmap:
+    mergeimports: true
+  proto:
+    mergeimports: true
+  shacl:
+    mergeimports: true
+  shex:
+    mergeimports: true
+  sqlddl:
+    mergeimports: true
+  typescript:
+    mergeimports: true
+    metadata: true
+
+...