This repository contains the code for analyzing data related to the following paper:
A patient-derived T-cell lymphoma biorepository uncovers new pathogenetic mechanisms and host-related therapeutic vulnerabilities. Danilo Fiore, Luca Vincenzo Cappelli, Liu Zhaoqi Nikita Kotlov, Maria Sorokina, Jude Phillip,0, Paul Zumbo, Liron Yoffe, Paola Ghione, Anqi Wang, Xueshuai Han William Chiu, Valentina Fragliasso, Fabrizio Tabbo, Nahuel Zamponi, Clarisse Kayembe, Marcello Gaudiano, Rodolfo Machiorlatti, Giuseppina Astone, Maria Teresa Cacciapuoti, Sanjay Patel, Francesca Zammarchi, Claudio Zanettini, Lucio Queiroz, Anastasia Nikitina, Olga Kudryasho-va, Anton Karelin, Daniil Nikitin, Dmitry Tychinin, Ekaterina Postovalova, Alexander Bagaev, Viktor Svekolkin, Ekaterina Belova, Katerina Tikhonova, Sandrine Degryse, Domenico Novero, Maurilio Ponzoni, Enrico Tiacci, Brunangelo Falini, Joo Song, Inna Khodos, Elisa De Stanchina Gabriele Macari, Luciana Cafforio, Simone Gardini, Roberto Piva, Enzo Medi-co, Samuel Y Ng, Allison Moskowitz, Zachary Epstein, Andrew Intlekofer, Dogan Ahmed0, Peter Martin, Jia Ruan, Francesco Bertoni, Robin Foà, Joshua D. Brody, Jaspreet Osan, Laura Santambrogio, Doron Betel, Wing C. Chan, Wayne Tam, David M. Wein-stock, Leandro Cerchietti, Raul Rabadan, Steven Horwitz, Giorgio Inghirami
Code is reported in Rmarkdown documents fig3_a_b_c.Rmd and fig6_d_e_g.Rmd and PTCL_Scripts.txt.