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@metagenlab

metagenlab

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  1. mummer2circos mummer2circos Public

    Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

    Python 97 24

  2. zDB zDB Public

    zDB: comparative bacterial genomics made easy

    HTML 28 4

  3. MeSS MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    Python 17 2

  4. assembly_finder assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    Python 10

  5. locus2genoplotr locus2genoplotr Public

    Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram

    Python 10 1

  6. zAMP zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    R 8 5

Repositories

Showing 10 of 26 repositories
  • MeSS-figures Public

    Supplemental code for reproducing MeSS paper figures

    metagenlab/MeSS-figures’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 18, 2024
  • zDB Public

    zDB: comparative bacterial genomics made easy

    metagenlab/zDB’s past year of commit activity
    HTML 28 MIT 4 3 0 Updated Sep 18, 2024
  • MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    metagenlab/MeSS’s past year of commit activity
    Python 17 MIT 2 2 0 Updated Sep 13, 2024
  • zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    metagenlab/zAMP’s past year of commit activity
    R 8 MIT 5 7 1 Updated Sep 9, 2024
  • assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    metagenlab/assembly_finder’s past year of commit activity
    Python 10 MIT 0 0 0 Updated Sep 4, 2024
  • zAMPExplorer Public

    zAMPExplorer

    metagenlab/zAMPExplorer’s past year of commit activity
    R 0 1 0 1 Updated Sep 4, 2024
  • locus2genoplotr Public

    Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram

    metagenlab/locus2genoplotr’s past year of commit activity
    Python 10 1 1 0 Updated Aug 20, 2024
  • chlamdb Public

    chlamdb.ch website code

    metagenlab/chlamdb’s past year of commit activity
    HTML 5 1 3 0 Updated Aug 20, 2024
  • MASRES Public
    metagenlab/MASRES’s past year of commit activity
    Nextflow 2 0 0 0 Updated Aug 12, 2024
  • benchmark-MeSS-CAMISIM Public

    Nextflow pipeline to benchmark two shotgun metagenomic communities simulators

    metagenlab/benchmark-MeSS-CAMISIM’s past year of commit activity
    Python 0 GPL-3.0 1 0 1 Updated Jul 9, 2024
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