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NMDC Sample Metadata Template's investigation type and mixs investigation type have almost nothing in common #389

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Tracked by #587
turbomam opened this issue Jul 26, 2021 · 2 comments

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@turbomam
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This is one component of issue #375

MIxS

bacteria_archaea
eukaryote
metagenome
metatranscriptome
mimag
mimarks-specimen
mimarks-survey
misag
miuvig
organelle
plasmid
virus

NMDC Sample Metadata Template

genome
transcriptome
16S-Amplicon
ITS-Amplicon
18S-Amplicon
proteome
metabolome
lipidome
organic matter
imaging- light
imaging- electron
imaging- ion
chemical speciation/mapping
molecular structure
@turbomam turbomam changed the title NMDC Sample Metadata Template's study type and mixs study type have almost nothing in common NMDC Sample Metadata Template's investigation type and mixs investigation type have almost nothing in common Jul 26, 2021
@wdduncan
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Did you also post an issue on the MIxS tracker? If so, can you link to it here?

@mslarae13
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This is because MIxS is focuing on the details on how the sequence data is done. THe information i'm gathering here is similar in definition, but we need more fields.

Open to changing this term if it needs to be unique from investigation_type (maybe analyses_performed, which is what I had suggested but I was limited to MIxS terms).

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3 participants