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Getting Started

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Adina Shanholtz edited this page May 2, 2023 · 4 revisions

Getting Started Landing Page

Resources to get your Cromwell on Azure instance up and running.

Deploy Cromwell on Azure
Deploy Private Cromwell on Azure
Building the Deployment Executable Yourself
Architecture Diagram

Toggle table of contents Pages 44

Home
4.0 Migration Guide
4.0.0 release notes
4.2.0 release notes
4.3.0 Release Notes
4.5.0 Release Notes
4.6.0 Release Notes
4.7.0 Re
4.7.0 Release Notes
5.0.0 Release Notes
5.1.0 Release Notes
5.2.0 Release Notes
5.2.3 Release Notes
5.3.0 Release Notes
5.3.1 Release Notes
5.3.3 Release Notes
5.4.0 Release notes
5.4.1 Release notes
5.4.2 Release Notes
[Deprecated] Update MySQL in Cromwell on Azure
Analysis
Architecture Diagram
Building the Deployment Executable Yourself
Cromwell on AKS Instructions and Troubleshooting
Customizing Your Instance
Deploy your instance of Cromwell on Azure
Deployer Command‐line Options
Example Workflow: Convert FASTQ files to uBAM file
FAQ And Troubleshooting
Getting Started
- Getting Started Landing Page
- Resources to get your Cromwell on Azure instance up and running.
Known Issues and Mitigation
Managing Your Workflow
Manually deploying CoA to an AKS cluster using Helm
Miscellaneous
Modifying WDLs for Azure
Performance & Optimization
Release Notes and Announcements
Running Common Workflows
Running Workflows
Services
Setting up private networking for Cromwell on Azure
Setup
Using a batch pool subnet with service endpoints to avoid load balancer charges
Using cromshell with Cromwell on Azure (kubectl port forwarding)

To search, expand the Pages section above.

Release Notes and Announcements

5.4.2 LATEST
- Migrating from 4.0.0

Getting Started

Deploy Cromwell on Azure
Deploy Private Cromwell on Azure
Building the Deployment Executable Yourself
Architecture Diagram

Running Workflows

Example Workflow: Convert FASTQ files to uBAM file
Running Common Workflows
Modifying WDLs for Azure
Managing your workflow
Using cromshell with CoA

Services

Cromwell on AKS Instructions and Troubleshooting
[Deprecated] Update MySQL in Cromwell on Azure

FAQ and Troubleshooting

Known Issues and Mitigation
Setup
Analysis
Customizing Your Instance
Performance & Optimization
Miscellaneous

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