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Debug: print funnel version #9

Debug: print funnel version

Debug: print funnel version #9

Workflow file for this run

name: Nextflow Test
on:
push:
jobs:
build:
runs-on: ubuntu-latest
steps:
- name: Check out code
uses: actions/checkout@v4
- name: Set up Go 1.x
uses: actions/setup-go@v5
with:
go-version-file: go.mod
- name: Build
run: make build
- name: Store Funnel
uses: actions/upload-artifact@v4
with:
name: funnelBin
path: funnel
nextflow:
runs-on: ubuntu-latest
needs: build
steps:
- name: Download Funnel
uses: actions/download-artifact@v4
with:
name: funnelBin
path: funnel
- name: Start Funnel
run: |
chmod +x ./funnel
./funnel server --LocalStorage.AllowedDirs $HOME run &
- name: Install Nextflow
run: |
cd ..
git clone https://github.com/nextflow-io/nextflow/ -b v24.04.4 --depth 1
cd nextflow
make compile
- name: Install nf-canary and GA4GH-TES plugin
run: |
cd ..
git clone https://github.com/seqeralabs/nf-canary
cd nf-canary
cat <<EOF >> nextflow.config
plugins {
id 'nf-ga4gh'
}
process.executor = 'tes'
tes.endpoint = 'http://localhost:8000'
EOF
- name: Run nf-canary tests
run: |
cd ../nf-canary
../nextflow/launch.sh run main.nf