Don't filter out NaNs for contours #235

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Linux pip

	on:
	pull_request:
	branches:
	- master
	- dev
	push:
	branches: [ master ]

	permissions:
	contents: read

	jobs:
	build-linux-pip:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python 3.9
	uses: actions/setup-python@v3
	with:
	python-version: "3.9"

	- name: Install deps
	run: \|
	python -m pip install --upgrade pip setuptools wheel

	- name: install caiman
	run: \|
	cd ..
	git clone https://github.com/flatironinstitute/CaImAn.git
	cd CaImAn
	pip install -r requirements.txt
	pip install .
	caimanmanager install

	- name: Install mesmerize-core
	run: \|
	pip install .

	- name: Test with pytest
	run: \|
	pip install pytest
	DOWNLOAD_GROUND_TRUTHS=1 pytest -s .

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