Add a github actions CI setup (#460)

.github/workflows/main.yml

@@ -0,0 +1,106 @@
+name: main
+
+on: [push, pull_request]
+
+
+jobs:
+  main:
+    name: test-py-${{ matrix.python }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-18.04]
+        python: [3.6, 3.7, 3.8]
+
+    services:
+      postgres:
+        image: postgres:11.6-alpine
+        ports:
+          - 5432:5432
+        env:
+          POSTGRES_USER: postgres
+          POSTGRES_PASSWORD: ""
+        # Add a health check
+        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Setup conda
+        uses: s-weigand/setup-conda@v1
+        with:
+          update-conda: true
+          activate-conda: false
+          python-version: ${{ matrix.python }}
+          conda-channels: anaconda
+
+      - name: Create envs
+        run: |
+          conda create --yes -n testenv python=$PYTHON_VERSION
+          conda env update -n testenv -f environment.yml
+          conda env create -f ci_tools/environment_iris_kit.yml
+        env:
+          PYTHON_VERSION: ${{ matrix.python }}
+
+      - name: Install ramp-board
+        run: |
+          source activate testenv
+          make inplace
+        env:
+          PYTHON_VERSION: ${{ matrix.python }}
+
+      - name: Test ramp-frontend
+        run: |
+          set -e
+          source activate testenv
+          python -m smtpd -n -c DebuggingServer 127.0.0.1:8025 &
+          sleep 3 # wait for the server to start
+          pytest -rvsl ramp-frontend --cov=ramp_frontend --cov-report=term-missing --cov-report=xml --cov-append
+
+      - name: Test ramp-engine
+        run: |
+          set -e
+          source activate testenv
+          pytest -rvsl ramp-engine/ --cov=ramp_engine --cov-report=term-missing --cov-report=xml --cov-append
+
+      - name: Test ramp-database
+        run: |
+          set -e
+          source activate testenv
+          pytest -rvsl ramp-database/ --cov=ramp_database --cov-report=term-missing  --cov-report=xml --cov-append
+
+      - name: Test ramp-utils
+        run: |
+          set -e
+          source activate testenv
+          pytest -rvsl ramp-utils/ --cov=ramp_utils --cov-report=term-missing --cov-report=xml --cov-append
+
+      - name: Test integration
+        run: |
+          set -e
+          source activate testenv
+          bash ci_tools/actions/integration_test.sh
+
+      - uses: codecov/codecov-action@v1
+        with:
+          fail_ci_if_error: true
+          verbose: true
+          file: ./coverage.xml
+
+  lint:
+    name: lint
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: actions/setup-python@v2
+        name: Install Python
+        with:
+          python-version: '3.7'
+
+      - name: Install dependencies
+        run: pip install flake8
+
+      - name: Run flake8
+        run: flake8 ramp-*

.gitignore

@@ -24,4 +24,5 @@ test_submissions/submission*
 .pytest_cache
 *.egg-info
 databoard.db
-db_engine.yml
+db_engine.yml
+coverage.xml

ci_tools/travis/integration_test.sh → ci_tools/actions/integration_test.sh

@@ -1,10 +1,10 @@
 #!/bin/bash
-set -e
+set -ex
 cd $HOME
 mkdir ramp_deployment
 cd ramp_deployment
-psql -U postgres -c "CREATE USER mrramp WITH PASSWORD 'mrramp';ALTER USER mrramp WITH SUPERUSER;"
-createdb --owner=mrramp databoard_test
+psql -U postgres -h 127.0.0.1 -c "CREATE USER mrramp WITH PASSWORD 'mrramp';ALTER USER mrramp WITH SUPERUSER;"
+createdb -U postgres -h 127.0.0.1 --owner=mrramp databoard_test
 ramp setup init
 
 echo "flask:
@@ -41,4 +41,4 @@ ramp setup deploy-event --event-config events/iris_test/config.yml
 ramp-database approve-user --login admin_user
 ramp-database sign-up-team --event iris_test --team admin_user
 ramp database add-submission --event iris_test --team admin_user --submission my_submission --path "$HOME/ramp_deployment/ramp-kits/iris/submissions/random_forest_10_10"
-ramp launch dispatcher --event-config events/iris_test/config.yml -vv
+ramp launch dispatcher --event-config events/iris_test/config.yml -vv

ramp-engine/ramp_engine/tests/test_dispatcher.py

@@ -1,6 +1,5 @@
 import shutil
 import os
-from time import sleep
 
 import pytest
 
@@ -16,7 +15,6 @@
 from ramp_database.tools.event import get_event
 from ramp_database.tools.submission import get_submissions
 from ramp_database.tools.submission import get_submission_by_id
-from ramp_database.tools.submission import set_submission_state
 
 from ramp_engine.local import CondaEnvWorker
 from ramp_engine.dispatcher import Dispatcher