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Compatible with the newest GDC (#35)
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* Update integration.R and add install_requirements.R (#34)

* Update smaple_names

* Update postComBat data

* Move install_requirements.R to upper

* Fix #33

Co-authored-by: ken-murakami <107227384+ken-murakami@users.noreply.github.com>
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Hiroaki Imoto and ken-murakami committed Jun 13, 2022
1 parent af871c4 commit 8690d5b
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15 changes: 15 additions & 0 deletions install_requirements.R
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install.packages("dplyr")
install.packages("edgeR")
install.packages("sva")
install.packages("tibble")
install.packages("data.table")
install.packages("stringr")
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data")
BiocManager::install("BioinformaticsFMRP/TCGAbiolinks")
install.packages("biomaRt")
install.packages("cluster")
install.packages("ComplexHeatmap")
install.packages("circlize")
install.packages("viridisLite")
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