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Releases: pawelqs/cevomod

v2.3.0

13 Oct 13:42
@pawelqs pawelqs
2.3.0
bd93223
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v2.3.0 Latest
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Subclones can be fitted using CliP (Jiang et al., 2021) (fit_subclones(method = "CliP")). This option requires that the Apptainer is installed. CliP container image can be build with build_clip_container()

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v2.0.0

13 Jul 14:26
@pawelqs pawelqs
2.0.0
17e258f
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v2.0.0

cevomod functions can no utilize VAF or CCF (Cancer Cell Fraction) as a measure of mutation frequency. CCF is calculated using the formula introduced in Dentro et al. Principles of Reconstructing the Subclonal Architecture of Cancers (2015)

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v1.0.0

13 Jul 14:24
@pawelqs pawelqs
1.0.0
830c769
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v1.0.0
  • cevodata class implementation
  • fitting the power-law tails with exponent equal to 2 using $M(f) \sim 1/f$ statistic
  • fitting the power-law tails with optimized exponent
  • fitting subclones using mclust
  • fitting subclones using BMix
  • calculation of the evolutionary parameters using the Williams et al. (2018) equations and the MOBSTER code (Caravagna et al. (2020))
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