added ploidy to catalog; closes popsim-consortium#1449

petrelharp · Aug 14, 2024 · cb7d71c · cb7d71c
1 parent e628ad0
commit cb7d71c
Showing 1 changed file with 11 additions and 2 deletions.
diff --git a/docs/_ext/speciescatalog.py b/docs/_ext/speciescatalog.py
@@ -93,6 +93,7 @@ def species_summary(self, species):
                     if stdpopsim.CiteReason.GEN_TIME in citation.reasons
                 ],
             ),
+            ("Ploidy", species.ploidy, None),
             (
                 "Population size",
                 species.population_size,
@@ -296,8 +297,8 @@ def genetic_maps_table(self, species):
     def chromosomes_table(self, species):
 
         table = nodes.table()
-        tgroup = nodes.tgroup(cols=4)
-        for _ in range(4):
+        tgroup = nodes.tgroup(cols=5)
+        for _ in range(5):
             colspec = nodes.colspec(colwidth=1)
             tgroup.append(colspec)
         table += tgroup
@@ -309,6 +310,10 @@ def chromosomes_table(self, species):
         entry += nodes.paragraph(text="ID")
         row += entry
 
+        entry = nodes.entry()
+        entry += nodes.paragraph(text="Ploidy")
+        row += entry
+
         entry = nodes.entry()
         entry += nodes.paragraph(text="Length")
         row += entry
@@ -330,6 +335,10 @@ def chromosomes_table(self, species):
             entry += nodes.paragraph(text=chrom.id)
             row += entry
 
+            entry = nodes.entry()
+            entry += nodes.paragraph(text="{:d}".format(chrom.ploidy))
+            row += entry
+
             entry = nodes.entry()
             entry += nodes.paragraph(text="{:d}".format(chrom.length))
             row += entry