Build context for a Flywheel Gear to execute FSL's FEAT.
This Gear uses a simple .fsf file that performs basic preprocessing.
This includes the following steps, all of which are optional (see manifest.json):
- Initial Volume Removal (default 0 volumes)
- Motion Correction (default YES)
- Slice Timing Correction (default YES, must specify acquisition order)
- Spatial Smoothing (default 5mmFWHM)
- Intensity Normalization (default YES)
- High-Pass Filtering (default 100s cutoff)
- Brain extraction (default YES)
- Registration to standard (default YES)
- Registration to alternate templates is supported when a Standard Template is specified AND the Use alt template option is set to 1 (true).
- Low_pass Filtering (default NO)