Merge pull request #34 from rpact-com/dev/4.0.0

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: rpact
 Title: Confirmatory Adaptive Clinical Trial Design and Analysis
-Version: 3.5.2.9232
-Date: 2024-03-07
+Version: 4.0.0.9239
+Date: 2024-04-05
 Authors@R: c(
 	person(
 		given = "Gernot", 
@@ -55,6 +55,7 @@ Imports:
 	graphics,
 	tools,
 	rlang,
+    R6 (>= 2.5.1),
 	knitr (>= 1.19), 
 	Rcpp (>= 1.0.3)
 LinkingTo: Rcpp
@@ -92,6 +93,7 @@ Collate:
     'class_design_plan.R'
     'class_design_power_and_asn.R'
     'class_event_probabilities.R'
+    'f_simulation_base_count_data.R'
     'f_simulation_utilities.R'
     'f_simulation_base_survival.R'
     'class_simulation_results.R'

NAMESPACE

@@ -11,6 +11,7 @@ S3method(as.data.frame,TrialDesignSet)
 S3method(as.list,Dictionary)
 S3method(as.matrix,FieldSet)
 S3method(as.vector,Dictionary)
+S3method(kable,ParameterSet)
 S3method(knit_print,ParameterSet)
 S3method(knit_print,SummaryFactory)
 S3method(length,TrialDesignSet)
@@ -38,6 +39,7 @@ S3method(print,ParameterSet)
 S3method(print,SimulationResults)
 S3method(print,SummaryFactory)
 S3method(print,TrialDesignCharacteristics)
+S3method(pull,ParameterSet)
 S3method(summary,AnalysisResults)
 S3method(summary,Dataset)
 S3method(summary,ParameterSet)
@@ -99,6 +101,7 @@ export(getSampleSizeCounts)
 export(getSampleSizeMeans)
 export(getSampleSizeRates)
 export(getSampleSizeSurvival)
+export(getSimulationCounts)
 export(getSimulationEnrichmentMeans)
 export(getSimulationEnrichmentRates)
 export(getSimulationEnrichmentSurvival)
@@ -112,12 +115,12 @@ export(getStageResults)
 export(getTestActions)
 export(getWideFormat)
 export(kable)
-export(kable.ParameterSet)
 export(mvnprd)
 export(mvstud)
 export(plotTypes)
 export(ppwexp)
 export(printCitation)
+export(pull)
 export(qpwexp)
 export(rcmd)
 export(readDataset)
@@ -130,8 +133,6 @@ export(testPackage)
 export(test_plan_section)
 export(writeDataset)
 export(writeDatasets)
-exportMethods("[")
-exportMethods(t)
 import(graphics)
 import(methods)
 import(stats)

NEWS.md

@@ -1,12 +1,14 @@
 
-# rpact 3.5.2
+# rpact 4.0.0
 
 ## New features
 
 * Extension of the function `getPerformanceScore()` for sample size recalculation rules to the setting of binary endpoints according to [Bokelmann et al. (2024)](https://doi.org/10.1186/s12874-024-02150-4)
+* The new functions `getSimulationCounts()` can be used to perform power simulations and the assessment of test characteristics for clinical trials with negative binomial distributed count data.
 
 ## Improvements, issues, and changes
 
+* All reference classes were replaced by [R6](https://cran.r-project.org/package=R6) classes due to better performance
 * Issue [#25](https://github.com/rpact-com/rpact/issues/25) fixed