Biosoup

Biosoup is a c++ collection of header only data structures used for storage and logging in bioinformatics tools.

Build

Dependencies

• gcc 4.8+ | clang 3.5+

Hidden

• (biosoup_test) google/googletest 1.10.0

CMake (3.11+)

git clone https://github.com/rvaser/biosoup && cd biosoup
cmake -B build -DCMAKE_BUILD_TYPE=Release
make -C build

Options

• biosoup_install: generate install target
• biosoup_build_tests: build unit tests

Meson (0.60.0+)

git clone https://github.com/rvaser/biosoup && cd biosoup
meson setup build
ninja -C build

Options

• tests: build unit tests

Acknowledgement

This work has been supported in part by the Croatian Science Foundation under the project Single genome and metagenome assembly (IP-2018-01-5886).