Allow tabix indexing of GAF graph alignment files #1763
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commit 1d11645 Merge: 5426f5c 6a7d33a Author: Adam Novak <anovak@soe.ucsc.edu> Date: Mon Mar 18 14:30:53 2024 -0400 Merge remote-tracking branch 'origin/master' into bgzip-gaf commit 5426f5c Author: Jean Monlong <jean.monlong@gmail.com> Date: Wed Sep 20 12:09:05 2023 +0200 update usage doc commit bdf5717 Author: Jean Monlong <jmonlong@ucsc.edu> Date: Thu Mar 23 23:43:53 2023 -0700 finish merge commit f35cf3e Merge: 3ad8d7f c1634e7 Author: Jean Monlong <jmonlong@ucsc.edu> Date: Thu Mar 23 23:16:43 2023 -0700 Merge branch 'develop' into bgzip-gaf commit 3ad8d7f Author: Jean Monlong <jmonlong@ucsc.edu> Date: Sun Oct 16 09:39:24 2022 -0400 index gaf with smallest and largest nodes
whitwham
reviewed
Mar 25, 2024
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@whitwham I've fixed the duplicate line. |
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Merged. Thank you. |
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This pulls in @jmonlong's implementation of Tabix indexing for GAF files, in graph node ID space.
This is to allow random access to bgzip-compressed GAF files in vgteam/vg using a tabix index.